View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7527_low_7 (Length: 221)

Name: NF7527_low_7
Description: NF7527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7527_low_7
NF7527_low_7
[»] chr7 (17 HSPs)
chr7 (1-208)||(21227828-21228035)
chr7 (8-208)||(8157908-8158108)
chr7 (30-134)||(26134228-26134332)
chr7 (28-128)||(5102061-5102161)
chr7 (33-134)||(9890805-9890906)
chr7 (88-132)||(2564468-2564512)
chr7 (40-130)||(21101802-21101893)
chr7 (53-131)||(4901383-4901461)
chr7 (8-144)||(1252742-1252879)
chr7 (33-132)||(13708013-13708113)
chr7 (11-63)||(1731510-1731562)
chr7 (30-139)||(2504749-2504859)
chr7 (82-139)||(20175163-20175220)
chr7 (92-132)||(3327047-3327087)
chr7 (8-63)||(19398428-19398483)
chr7 (9-49)||(1728056-1728096)
chr7 (45-132)||(31493466-31493553)
[»] chr5 (10 HSPs)
chr5 (30-132)||(17337279-17337381)
chr5 (30-128)||(27920899-27920997)
chr5 (44-134)||(26308176-26308267)
chr5 (53-139)||(17830690-17830776)
chr5 (33-114)||(9521327-9521407)
chr5 (53-132)||(32582571-32582650)
chr5 (30-133)||(112051-112155)
chr5 (45-132)||(17171016-17171103)
chr5 (30-114)||(26252346-26252429)
chr5 (42-130)||(32416862-32416950)
[»] chr6 (8 HSPs)
chr6 (9-138)||(22537872-22537998)
chr6 (30-139)||(10504150-10504260)
chr6 (53-134)||(34479120-34479201)
chr6 (30-135)||(33655377-33655482)
chr6 (30-127)||(9386631-9386729)
chr6 (27-132)||(9897650-9897756)
chr6 (82-131)||(26214889-26214938)
chr6 (82-134)||(32759067-32759119)
[»] chr1 (6 HSPs)
chr1 (32-139)||(13134554-13134661)
chr1 (47-134)||(25264486-25264573)
chr1 (53-139)||(33713272-33713358)
chr1 (30-132)||(17442756-17442858)
chr1 (28-132)||(7220739-7220842)
chr1 (32-132)||(15299537-15299637)
[»] chr8 (9 HSPs)
chr8 (30-133)||(17969925-17970028)
chr8 (30-139)||(24119179-24119289)
chr8 (35-132)||(24905166-24905263)
chr8 (83-132)||(13314450-13314499)
chr8 (30-132)||(17965540-17965642)
chr8 (8-75)||(26614802-26614869)
chr8 (45-106)||(15064854-15064914)
chr8 (82-127)||(29381821-29381866)
chr8 (88-132)||(27659928-27659972)
[»] chr4 (8 HSPs)
chr4 (30-134)||(7612705-7612809)
chr4 (51-131)||(19901164-19901244)
chr4 (30-113)||(12839276-12839358)
chr4 (72-139)||(17661025-17661092)
chr4 (32-134)||(19548072-19548174)
chr4 (30-132)||(20317192-20317295)
chr4 (34-115)||(10107599-10107681)
chr4 (85-132)||(14572406-14572454)
[»] scaffold0111 (1 HSPs)
scaffold0111 (88-139)||(4177-4228)
[»] chr3 (8 HSPs)
chr3 (30-139)||(23055602-23055712)
chr3 (30-132)||(6290350-6290452)
chr3 (27-144)||(21083761-21083877)
chr3 (88-132)||(21302516-21302560)
chr3 (44-134)||(26091881-26091972)
chr3 (32-79)||(26335726-26335773)
chr3 (35-127)||(21019376-21019469)
chr3 (88-132)||(30510509-30510553)
[»] chr2 (9 HSPs)
chr2 (40-130)||(8446553-8446643)
chr2 (53-134)||(30694900-30694981)
chr2 (89-132)||(12950511-12950554)
chr2 (82-132)||(23006687-23006738)
chr2 (30-101)||(25939665-25939735)
chr2 (30-63)||(18553392-18553425)
chr2 (82-134)||(12557154-12557206)
chr2 (88-132)||(28929242-28929286)
chr2 (77-132)||(45621382-45621438)
[»] scaffold0128 (1 HSPs)
scaffold0128 (30-132)||(57-159)
[»] scaffold0638 (1 HSPs)
scaffold0638 (82-132)||(277-327)
[»] scaffold0005 (1 HSPs)
scaffold0005 (85-132)||(244922-244970)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 21227828 - 21228035
Alignment:
Q  1 atagatataaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  21227828 atagatataaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagtacatcagcatactcttcctcttggtagttctacaaa 21227927  T
Q  101 caggcaaccctatcttgtctaccttaccaaggataaaagggtaattctaatattctaggtgcgcaggttcagtcacaatgttccttgttaagacaatttc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21227928 caggcaaccctatcttgtctatcttaccaaggataaaagggtaattctactattctaggtgcgccggttcagtcacaatgttccttgttaagacaatttc 21228027  T
Q  201 ccttattc 208  Q
    ||| ||||    
T  21228028 cctaattc 21228035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 8157908 - 8158108
Alignment:
Q  8 taaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaa 107  Q
    ||||||||| ||| | ||||||||||| ||||| |||||||||| ||||||||||| ||||||  ||||| || |||||| |||||||||||||| ||||    
T  8157908 taaattagaattcttaaatttatcctagaggtttcctcatctatgaatcttagaagtacatcaaaatactattcctcttgatagttctacaaacatgcaa 8158007  T
Q  108 ccctatcttgtctaccttaccaaggataaaagggtaattctaatattctaggtgcgcaggttcagtcacaatgttccttgttaagacaatttcccttatt 207  Q
    |||||||| ||| ||||||||||  ||||||| ||||| ||| | ||||||||||| |||||||   ||||||||| |  |||||||| |||||| ||||    
T  8158008 ccctatctcgtcaaccttaccaaaaataaaagtgtaatactactgttctaggtgcgtaggttcaactacaatgttcgtaattaagacattttcccatatt 8158107  T
Q  208 c 208  Q
    |    
T  8158108 c 8158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 26134332 - 26134228
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacca 129  Q
    ||||||| |||| ||| ||||| ||||||||||| | | || ||||||||  |||| ||||||||||||||| | ||||| ||||| |||||||||||||    
T  26134332 tcctaaaagttcactcttctatgaatcttagaagtatagcatcatactctccctctcggtagttctacaaacggacaaccatatctcgtctaccttacca 26134233  T
Q  130 aggat 134  Q
    |||||    
T  26134232 aggat 26134228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 5102161 - 5102061
Alignment:
Q  28 tatcctaaaggttccctcatctattaa-tcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctacctta 126  Q
    ||||||||||||||||||  ||||||| ||||||||| ||||||||| |||||  ||||  ||||||||||||||  ||||||||||||  |||||||||    
T  5102161 tatcctaaaggttccctcg-ctattaaatcttagaaggacatcagcacactctccctctcagtagttctacaaacgagcaaccctatctcatctacctta 5102063  T
Q  127 cc 128  Q
    ||    
T  5102062 cc 5102061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 9890805 - 9890906
Alignment:
Q  33 taaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||||||||||| ||| || ||||||||||| |||||| |||||||| ||||| | |||||||| |||| | |  |||| ||| ||||||||||||||||    
T  9890805 taaaggttccctgatcaatgaatcttagaagtacatcaacatactctcactctcgatagttctaaaaactgacttccctttctcgtctaccttaccaagg 9890904  T
Q  133 at 134  Q
    ||    
T  9890905 at 9890906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 2564468 - 2564512
Alignment:
Q  88 gtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  2564468 gtagttctacaaacaggcaaccctatctcgtctaccttaccaagg 2564512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 21101893 - 21101802
Alignment:
Q  40 tccctcatctattaatcttagaagcacatcagcatactctta-ctcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaa 130  Q
    |||||||||||| | ||||| ||| ||| ||||||||| ||  |||||| ||||||||| ||||| ||||| ||||||||||||||||||||    
T  21101893 tccctcatctatgagtcttaaaagtacaccagcatactattttctcttgatagttctaccaacagacaaccatatcttgtctaccttaccaa 21101802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 4901461 - 4901383
Alignment:
Q  53 aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaag 131  Q
    ||||||||||| |||||| || |||||  |||| ||||||||||||||  |||| |||||||| |||||||||||||||    
T  4901461 aatcttagaaggacatcaacaaactctccctctcggtagttctacaaatgggcatccctatctcgtctaccttaccaag 4901383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1252742 - 1252879
Alignment:
Q  8 taaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttac-tcttggtagttctacaaacaggca 106  Q
    ||||||||||||  | |||||||| ||||  ||| ||||||||  ||||||||||  |||| || ||||||||   ||||| ||||||||||||| | ||    
T  1252742 taaattagagtttttaaatttatcataaatattctctcatctacgaatcttagaaatacattagtatactcttttgtcttgatagttctacaaacggtca 1252841  T
Q  107 accctatcttgtctaccttaccaaggataaaagggtaa 144  Q
    ||  |||||||||||||||| ||||||| |||| ||||    
T  1252842 actatatcttgtctaccttatcaaggatgaaagagtaa 1252879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 13708013 - 13708113
Alignment:
Q  33 taaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaac-aggcaaccctatc-ttgtctaccttaccaa 130  Q
    ||||||| | ||||||||| |||||||||||||||| |||| |||||  |||||||||||| |||||||  || |||||||||  |||||||||||||||    
T  13708013 taaaggtccgctcatctatgaatcttagaagcacat-agcacactctccctcttggtagttatacaaacggggtaaccctatcagtgtctaccttaccaa 13708111  T
Q  131 gg 132  Q
    ||    
T  13708112 gg 13708113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 1731510 - 1731562
Alignment:
Q  11 attagagttcctgaatttatcctaaaggttccctcatctattaatcttagaag 63  Q
    |||||||||||| ||||||||||||||||||| |||| ||| |||||||||||    
T  1731510 attagagttcctaaatttatcctaaaggttccatcatttatgaatcttagaag 1731562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 2504749 - 2504859
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcag-catactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    |||||||||||| ||| ||||| ||| |||||||  ||||   ||||||||  |||| ||||||||||||||  || |||| ||||| ||||||||||||    
T  2504749 tcctaaaggttctctcgtctatgaatgttagaagttcatcttacatactctccctctcggtagttctacaaatgggaaaccatatctcgtctaccttacc 2504848  T
Q  129 aaggataaaag 139  Q
    |||||| ||||    
T  2504849 aaggatgaaag 2504859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 20175163 - 20175220
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggataaaag 139  Q
    |||| ||||||||||||||| | |||||| |||| |||||||||||||||||| ||||    
T  20175163 ctctcggtagttctacaaacggacaaccccatctcgtctaccttaccaaggatgaaag 20175220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 3327087 - 3327047
Alignment:
Q  92 ttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  3327087 ttctacaaacaggcaaccatatctcgtctaccttaccaagg 3327047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 19398483 - 19398428
Alignment:
Q  8 taaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaag 63  Q
    ||||||||||||||| |||||||||||||||||   |||||| | |||||||||||    
T  19398483 taaattagagttcctaaatttatcctaaaggttatgtcatctttgaatcttagaag 19398428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 1728056 - 1728096
Alignment:
Q  9 aaattagagttcctgaatttatcctaaaggttccctcatct 49  Q
    |||||||||||||| |||||||| |||||||||| ||||||    
T  1728056 aaattagagttcctaaatttatcgtaaaggttccatcatct 1728096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 31493466 - 31493553
Alignment:
Q  45 catctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    ||||||| |||||||| || |||| | || |||||  ||||| ||||||||||||||||||| |||||||   ||||||||||||||||    
T  31493466 catctatgaatcttaggagtacataa-cacactctccctcttagtagttctacaaacaggcagccctatcaacgtctaccttaccaagg 31493553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 17337381 - 17337279
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacca 129  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||||   |||| ||||||||||||||| | ||||| ||||| ||||||||||| |    
T  17337381 tcctaaaggttccctcatctatcaatcttagaagtacatcaacatactccccctctcggtagttctacaaacggacaaccttatctcgtctaccttacga 17337282  T
Q  130 agg 132  Q
    |||    
T  17337281 agg 17337279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 27920997 - 27920899
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| |||  ||||  | |||||||||||| |||| ||||||||  |||||||||||    
T  27920997 tcctaaaggttccctcatctatgaatcttagaagtacatcagcatattctccctctcagcagttctacaaacgggcagccctatctcatctaccttacc 27920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 26308176 - 26308267
Alignment:
Q  44 tcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    ||||||||| ||||||||||| |||||| || |||||   ||||||||||||||||||  ||||||||||||| | ||||||||||||||||    
T  26308176 tcatctattgaatcttagaaggacatcaacacactctccttcttggtagttctacaaattggcaaccctatctcgcctaccttaccaaggat 26308267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 17830690 - 17830776
Alignment:
Q  53 aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggataaaag 139  Q
    ||||||||||| |||| |||| |||||| |||| |||||||| |||||| ||||||| ||||| |||||||| |||| |||| ||||    
T  17830690 aatcttagaaggacattagcacactcttcctctcggtagttcaacaaacgggcaaccatatctcgtctacctcaccacggatgaaag 17830776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 9521327 - 9521407
Alignment:
Q  33 taaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc 114  Q
    |||||||| ||||| |||||| ||||||||| |||| |||| |||||  |||| ||||||||||||||| | ||||||||||    
T  9521327 taaaggtttcctcaactattagtcttagaagtacat-agcacactctccctctcggtagttctacaaacggacaaccctatc 9521407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 32582571 - 32582650
Alignment:
Q  53 aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    ||||||||||| |||||| |||| |||  |||||| | ||||| ||||||| || || ||||| ||||||||||||||||    
T  32582571 aatcttagaaggacatcaacatattctccctcttgtttgttcttcaaacagacatccatatctagtctaccttaccaagg 32582650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 112155 - 112051
Alignment:
Q  30 tcctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    |||||||||| || || |||||| ||||||||||| ||||||||||| |||  |||| | ||||||| ||||| || | || ||| | |||||||||| |    
T  112155 tcctaaaggtgccatcgtctattgaatcttagaaggacatcagcatattctccctctggatagttcttcaaacgggtagccatatttcgtctaccttatc 112056  T
Q  129 aagga 133  Q
    |||||    
T  112055 aagga 112051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 17171103 - 17171016
Alignment:
Q  45 catctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    ||||||| |||||||| || |||| | || |||||  |||||| |||||||||||||||||| |||||||   ||||||||||||||||    
T  17171103 catctatgaatcttagcagtacataa-cacactctccctcttgatagttctacaaacaggcagccctatcagcgtctaccttaccaagg 17171016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 26252346 - 26252429
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc 114  Q
    |||||| ||||| |||||| || ||||||||||| |||| |||| |||||  |||| ||||||||| ||||| |||| |||||||    
T  26252346 tcctaatggttcactcatcaatgaatcttagaagtacat-agcacactctccctctcggtagttctgcaaacgggcagccctatc 26252429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 32416950 - 32416862
Alignment:
Q  42 cctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaa 130  Q
    |||||||||| ||||||||||| | |||| |||| |||  |||| | || ||||||||||   ||||  ||||||||||||||||||||    
T  32416950 cctcatctatgaatcttagaagtatatcaacatattctccctctcgataattctacaaacgaacaactatatcttgtctaccttaccaa 32416862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 22537998 - 22537872
Alignment:
Q  9 aaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaac 108  Q
    ||||||| |||||| ||||| |||||| ||||| ||||| ||| ||||||||||| |||||||||||||||   |||||||||||||||| || ||||||    
T  22537998 aaattagggttcctaaatttttcctaatggttcactcatatatgaatcttagaagtacatcagcatactct--gtcttggtagttctacatacgggcaac 22537901  T
Q  109 cctatcttgtctaccttaccaaggataaaa 138  Q
      || || |||||||||||||| |||||||    
T  22537900 gtta-ctcgtctaccttaccaatgataaaa 22537872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 10504150 - 10504260
Alignment:
Q  30 tcctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    |||||||||| || || |||||| ||||||||||  |||||| || |||||  |||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  10504150 tcctaaaggtaccatcgtctattgaatcttagaaagacatcaacacactctccctctcggtagttctacaaaggggcaaccctatctcgtctaccttacc 10504249  T
Q  129 aaggataaaag 139  Q
    || ||| ||||    
T  10504250 aatgatgaaag 10504260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 34479120 - 34479201
Alignment:
Q  53 aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    ||||||||||| |||||| |||| |||  || ||||||||||||||||| |||| |||||||| ||||||||||| ||||||    
T  34479120 aatcttagaaggacatcaacatattctcgctattggtagttctacaaacgggcagccctatctcgtctaccttacaaaggat 34479201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 33655482 - 33655377
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacca 129  Q
    |||||||| ||  ||| ||||| |||||||||||  ||||| ||||||||| |||| ||||||||||||||  ||||||| ||||| | |||||||| ||    
T  33655482 tcctaaagattgactcgtctatgaatcttagaagttcatcaacatactcttcctctcggtagttctacaaaatggcaaccatatctcgactaccttagca 33655383  T
Q  130 aggata 135  Q
    | ||||    
T  33655382 aagata 33655377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 9386631 - 9386729
Alignment:
Q  30 tcctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttac 127  Q
    |||||||||| || ||||||||| |||||| |||| |||||| |||| |||  |||| | ||||||||||||||  || |||||||| |||||||||||    
T  9386631 tcctaaaggtaccatcatctattgaatctttgaaggacatcaacatattctccctctcgatagttctacaaacaatcagccctatctcgtctaccttac 9386729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 9897756 - 9897650
Alignment:
Q  27 ttatcctaaaggttccctcatctattaa-tcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctacctt 125  Q
    ||||||||||||||||||   ||||||| ||| ||||| | ||||||| |||||  |||| ||||||||||| ||  |||  |||||||| |||||||||    
T  9897756 ttatcctaaaggttcccttgcctattaaatctcagaaggaaatcagcacactctccctctaggtagttctacgaaatggctgccctatctcgtctacctt 9897657  T
Q  126 accaagg 132  Q
    || ||||    
T  9897656 acaaagg 9897650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 26214938 - 26214889
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaag 131  Q
    |||| ||||||| ||||||| | ||||||||||| |||||||||||||||    
T  26214938 ctctcggtagttatacaaacggacaaccctatctcgtctaccttaccaag 26214889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 32759067 - 32759119
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    |||| ||||||||||||||   || ||||||||| ||||||||||||||||||    
T  32759067 ctctcggtagttctacaaatgagctaccctatctcgtctaccttaccaaggat 32759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 13134661 - 13134554
Alignment:
Q  32 ctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaag 131  Q
    |||||||||| ||||||||| ||||||||| | |||||| ||||||||  || | ||||||||||||||  ||||||||||||| |||| | ||||||||    
T  13134661 ctaaaggttcactcatctatgaatcttagatgtacatcaacatactctccctatcggtagttctacaaatgggcaaccctatctcgtcttctttaccaag 13134562  T
Q  132 gataaaag 139  Q
    ||| ||||    
T  13134561 gatgaaag 13134554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 25264486 - 25264573
Alignment:
Q  47 tctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    ||||| ||| |||||||  ||||| |||||||| ||| | ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  25264486 tctatgaatattagaagttcatcaacatactctcactttcggtagttctacaaacaggcaaccctatctcgtctaccttatcaaggat 25264573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 33713272 - 33713358
Alignment:
Q  53 aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggataaaag 139  Q
    ||||||||||| |||||| |||| |||| |||| ||||||||||||||  ||||||| ||||||||||| |||||||||||| ||||    
T  33713272 aatcttagaaggacatcaacatattcttcctctcggtagttctacaaatgggcaaccttatcttgtctatcttaccaaggatgaaag 33713358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 17442756 - 17442858
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttacc 128  Q
    ||||||||||||| |||||||| ||||||||||| |||| |||| ||||   |||| ||||||||||||||| || |||||||||   ||||||||||||    
T  17442756 tcctaaaggttccttcatctatgaatcttagaagtacat-agcacactcgccctctcggtagttctacaaacgggaaaccctatcagcgtctaccttacc 17442854  T
Q  129 aagg 132  Q
    ||||    
T  17442855 aagg 17442858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 7220739 - 7220842
Alignment:
Q  28 tatcctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctacctta 126  Q
    ||||||||||||||| ||  ||||| ||||||||||| |||||| || ||||   |||| ||||||||||||||| ||||| | ||||| ||||||||||    
T  7220739 tatcctaaaggttccatcgcctattgaatcttagaaggacatcaacacactcc--ctctcggtagttctacaaacgggcaagcttatctcgtctacctta 7220836  T
Q  127 ccaagg 132  Q
    ||||||    
T  7220837 ccaagg 7220842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 15299537 - 15299637
Alignment:
Q  32 ctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaa 130  Q
    |||||||||| ||||||||| | ||||||||| ||| || || || ||  | || ||||||||||||||||| |||||||||| | ||||||||||||||    
T  15299537 ctaaaggttctctcatctatgagtcttagaagtaca-caacacaccctcccactcggtagttctacaaacagacaaccctatcatcgtctaccttaccaa 15299635  T
Q  131 gg 132  Q
    ||    
T  15299636 gg 15299637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 17969925 - 17970028
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacca 129  Q
    |||||||| ||||| ||| ||| ||||||||||| |||||| |||| ||||  ||||||||||||||||||||   |||||||||| |||| || |||||    
T  17969925 tcctaaagtttcccacatttatgaatcttagaagtacatcatcatattcttcatcttggtagttctacaaacatataaccctatctcgtcttccatacca 17970024  T
Q  130 agga 133  Q
    ||||    
T  17970025 agga 17970028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 24119289 - 24119179
Alignment:
Q  30 tcctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    ||||| |||| ||||||| |||| ||||||||||| |||||| || |||||  ||||   ||||||||||||| ||||||||||||| ||||||||||||    
T  24119289 tcctataggtaccctcatttattgaatcttagaaggacatcaacacactctccctctctatagttctacaaacgggcaaccctatctcgtctaccttacc 24119190  T
Q  129 aaggataaaag 139  Q
    | |||| ||||    
T  24119189 agggatgaaag 24119179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 24905166 - 24905263
Alignment:
Q  35 aaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    ||||||| ||||| ||| ||||| ||||| |||| || | |||||  |||| |||||||||||||||||||| |||||||  |||||||||||||||||    
T  24905166 aaggttctctcatatatgaatctaagaagtacat-agaacactctatctctcggtagttctacaaacaggcagccctatcagtgtctaccttaccaagg 24905263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 13314499 - 13314450
Alignment:
Q  83 tcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||| ||||||||||||||||| | |||||||| ||||||||||||||||    
T  13314499 tcttagtagttctacaaacaggaagccctatctcgtctaccttaccaagg 13314450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 17965540 - 17965642
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttacc 128  Q
    |||||||||| |||| |||||| ||||||||||| |||| | || |||||  ||||| ||| |||||||||||| || |||||||   ||||||||||||    
T  17965540 tcctaaaggtacccttatctatgaatcttagaagtacat-aacacactctccctcttagtaattctacaaacagacagccctatcagcgtctaccttacc 17965638  T
Q  129 aagg 132  Q
    ||||    
T  17965639 aagg 17965642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 26614869 - 26614802
Alignment:
Q  8 taaattagagttcctgaatttatcctaaaggttccctcatctattaatcttagaagcacatcagcata 75  Q
    ||||||||||||||| |||||||| |||| ||||  |||| ||| ||||||||||| ||||| |||||    
T  26614869 taaattagagttcctaaatttatcttaaatgttctatcatttatgaatcttagaagtacatcggcata 26614802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 15064914 - 15064854
Alignment:
Q  45 catctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggca 106  Q
    ||||||| |||| ||||||||||| |||| |||||  |||| ||||||||||||||||||||    
T  15064914 catctatgaatcatagaagcacat-agcacactctccctctcggtagttctacaaacaggca 15064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 29381866 - 29381821
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatcttgtctaccttac 127  Q
    ||||| |||||||||||||||| |||| |||||| |||||||||||    
T  29381866 ctcttagtagttctacaaacagtcaactctatctcgtctaccttac 29381821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 27659928 - 27659972
Alignment:
Q  88 gtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||||||||||||| | |||||||||||| |||||||||| ||||    
T  27659928 gtagttctacaaacggacaaccctatcttatctaccttactaagg 27659972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 7612705 - 7612809
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacca 129  Q
    ||||||||||||||| |||||| ||||||||||| |||||| |||| |||   ||| | ||||||||||||| |||| | || ||| |||||||||| ||    
T  7612705 tcctaaaggttcccttatctatgaatcttagaagtacatcaacatattctccatctcgatagttctacaaacgggcagctctgtctcgtctaccttatca 7612804  T
Q  130 aggat 134  Q
    |||||    
T  7612805 aggat 7612809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 19901164 - 19901244
Alignment:
Q  51 ttaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaag 131  Q
    ||||||||||||| | ||||||| | |||  |||| |||||||||||| ||  ||| |||||||||| |||||||||||||    
T  19901164 ttaatcttagaaggagatcagcacaatctccctctcggtagttctacagacgtgcatccctatcttgcctaccttaccaag 19901244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 12839358 - 12839276
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctat 113  Q
    ||||||||||| |||||||| | ||||||||||| |||| | || |||||  |||| ||||||||||||||| |||| ||||||    
T  12839358 tcctaaaggtttcctcatctgtaaatcttagaagtacat-aacacactctccctctcggtagttctacaaacgggcatccctat 12839276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 17661025 - 17661092
Alignment:
Q  72 catactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggataaaag 139  Q
    |||| |||| |||| |||| |||||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  17661025 cataatcttcctctaggtatttctacaaacgggcagtcctatctcgtctatcttaccaaggataaaag 17661092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 19548174 - 19548072
Alignment:
Q  32 ctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaa 130  Q
    ||||| || |||||||||||| ||||||||||| |||||| |||| |||  || | ||||||| ||||||  ||||||||||| | ||| ||||||||||    
T  19548174 ctaaacgtgccctcatctattgaatcttagaaggacatcaacatattctacct-tcggtagttttacaaatgggcaaccctatatcgtcaaccttaccaa 19548076  T
Q  131 ggat 134  Q
    ||||    
T  19548075 ggat 19548072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 20317295 - 20317192
Alignment:
Q  30 tcctaaaggttccctcatctattaa-tcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    |||||||||||||||||||| ||   ||||||||| |||||| || | |||  |||||| ||||||||||||| || |  | ||||| ||||||||||||    
T  20317295 tcctaaaggttccctcatctcttgggtcttagaaggacatcaacacattctccctcttgatagttctacaaacgggaagtcatatctcgtctaccttacc 20317196  T
Q  129 aagg 132  Q
    ||||    
T  20317195 aagg 20317192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 10107599 - 10107681
Alignment:
Q  34 aaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatct 115  Q
    |||||| ||||| |||||| ||||||||||| |||||| |||| |||  ||||  ||||||||||||||||||  ||||||||    
T  10107599 aaaggtaccctcgtctattgaatcttagaaggacatcaacatattctccctctcagtagttctacaaacaggctcccctatct 10107681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 14572406 - 14572454
Alignment:
Q  85 ttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    ||||||||||||||||| || |||||||||  |||||||||||||||||    
T  14572406 ttggtagttctacaaacgggaaaccctatcagtgtctaccttaccaagg 14572454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 4177 - 4228
Alignment:
Q  88 gtagttctacaaacaggcaaccctatcttgtctaccttaccaaggataaaag 139  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  4177 gtagttccacaaacaggcaaccctatctcgtctaccttaccaaggattaaag 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 23055712 - 23055602
Alignment:
Q  30 tcctaaaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttacc 128  Q
    |||||||||  ||||| |||||| ||||||| ||| |||| |||| |||||  |||| | ||||||||||||||||| ||  ||||| ||||||||||||    
T  23055712 tcctaaaggcaccctcgtctattgaatcttaaaaggacattagcacactctctctctcgttagttctacaaacaggcgactttatctggtctaccttacc 23055613  T
Q  129 aaggataaaag 139  Q
    |||||| ||||    
T  23055612 aaggatgaaag 23055602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 6290350 - 6290452
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttacc 128  Q
    |||||||||||| ||||||||| |||||||||||  ||| | ||||||||   ||||||||||||||||||||| || | |||||   ||||||||||||    
T  6290350 tcctaaaggttctctcatctatgaatcttagaagtgcat-aacatactctccttcttggtagttctacaaacagacatctctatcagcgtctaccttacc 6290448  T
Q  129 aagg 132  Q
    ||||    
T  6290449 aagg 6290452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 21083761 - 21083877
Alignment:
Q  27 ttatcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctacctta 126  Q
    |||||||||  || ||||||  ||| ||| ||| ||| |||||||||||||| |  |||||| ||||||||||||  || |||||||||  || ||||||    
T  21083761 ttatcctaagagtaccctcacatatgaattttaaaagtacatcagcatactcctcatcttggaagttctacaaacgagc-accctatctcatcaacctta 21083859  T
Q  127 ccaaggataaaagggtaa 144  Q
    |||||||| |||||||||    
T  21083860 ccaaggatgaaagggtaa 21083877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 21302516 - 21302560
Alignment:
Q  88 gtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||    
T  21302516 gtagttctacaaacgagcaaccctatctcgtctaccttaccaagg 21302560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 26091881 - 26091972
Alignment:
Q  44 tcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    ||||||||| ||||||||||  |||||| | || |||  |||| ||||||||||||||| ||||| ||||||| | ||| ||||||||||||    
T  26091881 tcatctattgaatcttagaacgacatcaacttattctccctctcggtagttctacaaacgggcaatcctatctcgcctaacttaccaaggat 26091972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 26335726 - 26335773
Alignment:
Q  32 ctaaaggttccctcatctattaatcttagaagcacatcagcatactct 79  Q
    ||||||||||| |||||||| ||||||||||| |||||| ||||||||    
T  26335726 ctaaaggttccatcatctatgaatcttagaagtacatcaacatactct 26335773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 21019469 - 21019376
Alignment:
Q  35 aaggttccctcatctatt-aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttac 127  Q
    ||||| ||||| |||||| |||||| |||  ||||||||| |||||  |||| |||||||||||||||  ||| || |||||||| ||||||||    
T  21019469 aaggtaccctcgtctattgaatctttgaatgacatcagcacactctccctctaggtagttctacaaaccagcagccttatcttgtgtaccttac 21019376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 30510553 - 30510509
Alignment:
Q  88 gtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||||||||||||||| |||| |||||| ||||||||||| ||||    
T  30510553 gtagttctacaaacagacaactctatctcgtctaccttacgaagg 30510509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 8446643 - 8446553
Alignment:
Q  40 tccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaa 130  Q
    ||||| |||||| |||||||| || |||||| ||||||||  || | ||||||||||||||| | ||||||||||| ||||| ||||||||    
T  8446643 tccctaatctatgaatcttaggagtacatcaacatactctctctttcggtagttctacaaacggacaaccctatctcgtctatcttaccaa 8446553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 30694981 - 30694900
Alignment:
Q  53 aatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    ||||||||||| |||||| |||| |||  |||| ||||||| ||||||| || | |||||| ||||||||||||||||||||    
T  30694981 aatcttagaaggacatcaacatattctccctctcggtagttatacaaacgggaagccctatgttgtctaccttaccaaggat 30694900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 12950554 - 12950511
Alignment:
Q  89 tagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||    
T  12950554 tagttctacaaacgggcagccctatctcgtctaccttaccaagg 12950511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 23006738 - 23006687
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    |||||||||||||||||||| ||||||||||||  | |||||||||||||||    
T  23006738 ctcttggtagttctacaaacgggcaaccctatcagtttctaccttaccaagg 23006687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 25939665 - 25939735
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaac 101  Q
    |||||||||||||||||||||| ||||||| ||| |||| || | |||||  |||| |||||||||||||||    
T  25939665 tcctaaaggttccctcatctatgaatcttaaaagaacat-agaacactctccctctcggtagttctacaaac 25939735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 18553425 - 18553392
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaag 63  Q
    |||||||||||||||||||||| |||||||||||    
T  18553425 tcctaaaggttccctcatctatgaatcttagaag 18553392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 12557206 - 12557154
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaaggat 134  Q
    |||| ||||||||||||||| ||||  ||||||| || |||||||||||||||    
T  12557206 ctctcggtagttctacaaaccggcagtcctatctcgtataccttaccaaggat 12557154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 28929242 - 28929286
Alignment:
Q  88 gtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    |||||||||||||| || ||| |||||| ||||||||||||||||    
T  28929242 gtagttctacaaacgggtaactctatctcgtctaccttaccaagg 28929286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 45621438 - 45621382
Alignment:
Q  77 tcttactcttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    |||| |||||||||||||||||||| | ||||||||||   ||||||||||||||||    
T  45621438 tcttcctcttggtagttctacaaacggacaaccctatcaacgtctaccttaccaagg 45621382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 159 - 57
Alignment:
Q  30 tcctaaaggttccctcatctattaatcttagaagcacatcagcatactcttactcttggtagttctacaaacaggcaacccta-tcttgtctaccttacc 128  Q
    |||||||| ||||||||||||| ||||||||||| |||| |||| ||||   |||| ||||||||||||||| || | ||||| |  |||||||||||||    
T  159 tcctaaagtttccctcatctatgaatcttagaagtacat-agcacactccccctctcggtagttctacaaacgggaagccctattagtgtctaccttacc 61  T
Q  129 aagg 132  Q
    ||||    
T  60 aagg 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 327 - 277
Alignment:
Q  82 ctcttggtagttctacaaacaggcaaccctatcttgtctaccttaccaagg 132  Q
    ||||| ||||||||||||||||| | |||||||| ||||||||||| ||||    
T  327 ctcttagtagttctacaaacaggaagccctatctcgtctaccttactaagg 277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 244970 - 244922
Alignment:
Q  85 ttggtagttctacaaacaggcaaccctatc-ttgtctaccttaccaagg 132  Q
    ||||||||||||||||| || |||||||||  |||||||||||||||||    
T  244970 ttggtagttctacaaacgggaaaccctatcagtgtctaccttaccaagg 244922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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