View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7528_low_2 (Length: 462)
Name: NF7528_low_2
Description: NF7528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7528_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 1599131 - 1598684
Alignment:
| Q |
1 |
cagtcctagtttcggattttaagcatgac---actgatgacagcttttgacacatagtcatattaacaccaaccacacaataaaagacactacatgatat |
97 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1599131 |
cagtcctagtttcggattttaagcatgacgacactgatgacagctt--gacacatagtcatattaacaccaaccacacaataaaagacactacatgatat |
1599034 |
T |
|
| Q |
98 |
tttgtttatctctctgtacaaaagtttttccaacaatgctaaatcagcattggtctctgaaatttgtctatgaattgaaacttcaatccttcaccagttt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1599033 |
tttgtttatctctctgtacaaaagtttttccaacaatgctaaatcagcactggtctctgaaatttgtctatgaattgaaacttcaatccttcaccagttt |
1598934 |
T |
|
| Q |
198 |
tcctatcccttataagattcttgaaggtttgtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataactagtgaa |
297 |
Q |
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| T |
1598933 |
tcctatcccttataagattcttgaaggtttgtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataactagtgaa |
1598834 |
T |
|
| Q |
298 |
ataaaccgaactttacatatatgctacgacctaagttacatggtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagat |
397 |
Q |
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| T |
1598833 |
ataaaccgaactttacatatatgctacgacctaagttacatagtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagat |
1598734 |
T |
|
| Q |
398 |
ggatgaaatcaagtaacaagtgatatccgtgtttctgaaagcatcaaatt |
447 |
Q |
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| T |
1598733 |
ggatgaaatcaagtaacaagtgatatcagtgtttctgaaagcatcaaatt |
1598684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 3 - 447
Target Start/End: Original strand, 41222536 - 41222984
Alignment:
| Q |
3 |
gtcctagtttcggattttaagcatgacactgatgacagcttttgacacatagtcatattaacaccaaccacacaataaaagacactacatgatattttgt |
102 |
Q |
| |
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|||||||||| ||| ||||||| ||||||||| || || | || |||| ||||||||||||||||||||||||||||||||| |||| |||| || | |
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| T |
41222536 |
gtcctagttttagatattaagcacgacactgataacggcat--gaaacatggtcatattaacaccaaccacacaataaaagacaatacaagatagtta-t |
41222632 |
T |
|
| Q |
103 |
ttatctctctgtacaaaagtttttccaacaatgctaaatcagcattggtct----------ctgaaatttgtctatgaattgaaacttcaatccttcacc |
192 |
Q |
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| T |
41222633 |
ttatctct--gtacaaaagtttttctaacaaagctaaatcagcactggcctagtcttaagactgaaatttgacaatgagttgaaatttcaatccttcacc |
41222730 |
T |
|
| Q |
193 |
agttttcctatcccttataagattcttgaaggtttgtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataacta |
292 |
Q |
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| T |
41222731 |
agtttgtctatcccctctaagttttttgaaggtt-gtgcaacccaataataaagtattgttcctagaaccagtttgacacaacacatactactgtaacca |
41222829 |
T |
|
| Q |
293 |
gtgaaataaaccgaactttacatatatgctacgacctaagttacatggtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgca |
392 |
Q |
| |
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| T |
41222830 |
gtgaaatagaatgatctctacatatatgctacaacataagctacatagtaccacaacatagtcaccaatatgtcatgtcttctccatgttgaatcctgca |
41222929 |
T |
|
| Q |
393 |
aagatggatgaaatcaagtaacaagtgatatccgtgtttctgaaagcatcaaatt |
447 |
Q |
| |
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||| ||||||||||||| |||||||||| ||| ||| ||||||| |||||||||| |
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| T |
41222930 |
aagttggatgaaatcaaataacaagtgacatcggtgcttctgaaggcatcaaatt |
41222984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 447
Target Start/End: Complemental strand, 16234336 - 16234036
Alignment:
| Q |
154 |
ctgaaatttgtctatgaattgaaacttcaatccttcaccagttttcctatcccttataagattcttgaaggtttgtgcaaccaaaaaacaatgtattgtt |
253 |
Q |
| |
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|||||||||| | |||| || |||||||||||||| |||||||| ||||||| |||||| || |||||||| |||||||| || || || |||||||| |
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| T |
16234336 |
ctgaaatttgacaatgagtttaaacttcaatccttaaccagtttgtctatcccctataagttttatgaaggtt-gtgcaacccaataataaagtattgtt |
16234238 |
T |
|
| Q |
254 |
tctagaacaagcgtgacacaaaatatactactataactagtgaaataaaccgaactttacata----tatgctacgacctaagttacatggtaacaggac |
349 |
Q |
| |
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||||||| || ||||||||| | ||||| || |||| ||||||||| | ||| || ||| || |||||||| || |||| | ||| |||| | || |
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| T |
16234237 |
cctagaaccagtgtgacacaacaaatactcctttaaccagtgaaatagaacgatctctacgtacgtatatgctacaacataagctccatagtaaaacaac |
16234138 |
T |
|
| Q |
350 |
ata----gtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatccgtgtttctgaaagcatcaaa |
445 |
Q |
| |
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||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||| ||| ||| ||||||| |||||||| |
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| T |
16234137 |
atatatagtcaccaatatgtcatgtcttctccatgttgaatcctgcaaagttggatgaaatccaataacaagtgacatcggtgcttctgaaggcatcaaa |
16234038 |
T |
|
| Q |
446 |
tt |
447 |
Q |
| |
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|| |
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|
| T |
16234037 |
tt |
16234036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 41217096 - 41217169
Alignment:
| Q |
351 |
tagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatc |
424 |
Q |
| |
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|||||| |||||||||||||||||| ||| | |||||||||| | |||||||||||||||||||| ||||||| |
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| T |
41217096 |
tagtcaccaatatgtcatgtcttcttcattgtgaatcctgcaaggttggatgaaatcaagtaacaattgatatc |
41217169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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