View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7528_low_4 (Length: 357)

Name: NF7528_low_4
Description: NF7528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7528_low_4
NF7528_low_4
[»] chr1 (4 HSPs)
chr1 (219-340)||(43583786-43583905)
chr1 (128-218)||(5900148-5900238)
chr1 (178-214)||(46315411-46315447)
chr1 (128-215)||(44289342-44289429)
[»] chr7 (3 HSPs)
chr7 (129-217)||(7744400-7744488)
chr7 (179-218)||(45638351-45638390)
chr7 (178-215)||(45639106-45639143)
[»] chr8 (3 HSPs)
chr8 (128-220)||(31882640-31882732)
chr8 (177-217)||(37810321-37810361)
chr8 (177-218)||(37811078-37811119)
[»] chr5 (2 HSPs)
chr5 (128-217)||(2358561-2358650)
chr5 (166-218)||(31659047-31659099)
[»] chr4 (1 HSPs)
chr4 (128-213)||(30057815-30057900)
[»] chr3 (5 HSPs)
chr3 (166-218)||(16254283-16254333)
chr3 (178-214)||(16253552-16253588)
chr3 (177-217)||(23709531-23709571)
chr3 (177-217)||(23727987-23728027)
chr3 (177-217)||(23746443-23746483)
[»] scaffold0059 (1 HSPs)
scaffold0059 (166-218)||(8927-8979)
[»] scaffold0013 (1 HSPs)
scaffold0013 (166-218)||(236419-236471)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 43583786 - 43583905
Alignment:
Q  219 cacctattagtggatgtaacaaagctgtccagatttgggagaatgcggagtgatgggatttgatcaaaggatgtgttgaagtggcataaggatgcactga 318  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43583786 cacctattagtgggtgtaacaaagctgtccagatttgggagaatgcagagtgatgggatttgatcaaaggatatgttgaagtggcataaggatgcactga 43583885  T
Q  319 actcatattcggaattttgatc 340  Q
    ||||  ||||||||||||||||    
T  43583886 actc--attcggaattttgatc 43583905  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 5900148 - 5900238
Alignment:
Q  128 ttttaatctcagccattctttttaatccggtggttattatttattctcttcattctcacatataaatagcattctcatgtgatatgccccc 218  Q
    ||||||||| |||| ||||||||||||  |||| |  ||||||||||  |||||||||||||||| || ||||||||||||||||||||||    
T  5900148 ttttaatcttagcctttctttttaatctagtggcttgtatttattcttatcattctcacatataactatcattctcatgtgatatgccccc 5900238  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 46315411 - 46315447
Alignment:
Q  178 cattctcacatataaatagcattctcatgtgatatgc 214  Q
    |||||||||||||||||| ||||||||||||||||||    
T  46315411 cattctcacatataaatatcattctcatgtgatatgc 46315447  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 44289429 - 44289342
Alignment:
Q  128 ttttaatctcagccattctttttaatccggtggttattatttattctcttcattctcacatataaata-gcattctcatgtgatatgcc 215  Q
    ||||||||||| ||||| ||||||||| |  || | | |||||||||| ||||||||||||| | |||  |||||||||||||||||||    
T  44289429 ttttaatctcacccattatttttaatctgacggctgtaatttattctcatcattctcacata-agatacccattctcatgtgatatgcc 44289342  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 7744400 - 7744488
Alignment:
Q  129 tttaatctcagccattctttttaatccggtggttattatttattctcttcattctcacatataaatagcattctcatgtgatatgcccc 217  Q
    |||||||| |||||||||||||||||   |||||  ||||||||||| |||||||||||||||| || |||||||||||||||||||||    
T  7744400 tttaatctaagccattctttttaatctaatggtttctatttattctcatcattctcacatataactaccattctcatgtgatatgcccc 7744488  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 45638390 - 45638351
Alignment:
Q  179 attctcacatataaatagcattctcatgtgatatgccccc 218  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  45638390 attctcacatataaatatcattctcatgtgatatgccccc 45638351  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 45639106 - 45639143
Alignment:
Q  178 cattctcacatataaatagcattctcatgtgatatgcc 215  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  45639106 cattctcacatataaatatcattttcatgtgatatgcc 45639143  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 31882732 - 31882640
Alignment:
Q  128 ttttaatctcagccattctttttaatccggtggttattatttattctcttcattctcacatataaatagcattctcatgtgatatgcccccca 220  Q
    |||||| || |||| ||||||||||||  ||||||  ||||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  31882732 ttttaaacttagcccttctttttaatctagtggttcatatttattcttatcattctcacatataactatcattctcatgtgatatgcccccca 31882640  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 37810361 - 37810321
Alignment:
Q  177 tcattctcacatataaatagcattctcatgtgatatgcccc 217  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  37810361 tcattctcacctataaatatcattctcatgtgatatgcccc 37810321  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 37811078 - 37811119
Alignment:
Q  177 tcattctcacatataaatagcattctcatgtgatatgccccc 218  Q
    |||||||||| |||||||| |||||||||| |||||||||||    
T  37811078 tcattctcacctataaatatcattctcatgcgatatgccccc 37811119  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 2358650 - 2358561
Alignment:
Q  128 ttttaatctcagccattctttttaatccggtggttattatttattctcttcattctcacatataaata-gcattctcatgtgatatgcccc 217  Q
    ||||||||||| |||||  |||||||| | ||| | | |||||||||| ||||||||||||| | |||  |||||||||||||||||||||    
T  2358650 ttttaatctcatccattgcttttaatctgatgggtgtaatttattctcatcattctcacata-agatatccattctcatgtgatatgcccc 2358561  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 31659047 - 31659099
Alignment:
Q  166 atttattctcttcattctcacatataaatagcattctcatgtgatatgccccc 218  Q
    ||||||||||  |||||||||||| ||||  ||||||||||||||||| ||||    
T  31659047 atttattctcaccattctcacatacaaatgtcattctcatgtgatatgtcccc 31659099  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 30057815 - 30057900
Alignment:
Q  128 ttttaatctcagccattctttttaatccggtggttattatttattctcttcattctcacatataaatagcattctcatgtgatatg 213  Q
    ||||||||||||||||   ||||||||   ||| |  ||||||||||  |||||||||||||||| |  |||||||||||||||||    
T  30057815 ttttaatctcagccatgtattttaatctaatggctcctatttattcttatcattctcacatataattgtcattctcatgtgatatg 30057900  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 16254283 - 16254333
Alignment:
Q  166 atttattctcttcattctcacatataaatagcattctcatgtgatatgccccc 218  Q
    |||||||||  |||||||||||||  |||| ||||||||||||||||||||||    
T  16254283 atttattcttatcattctcacata--aatatcattctcatgtgatatgccccc 16254333  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 16253588 - 16253552
Alignment:
Q  178 cattctcacatataaatagcattctcatgtgatatgc 214  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  16253588 cattctcatatataaatatcattctcatgtgatatgc 16253552  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 23709571 - 23709531
Alignment:
Q  177 tcattctcacatataaatagcattctcatgtgatatgcccc 217  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  23709571 tcattctcatatataactatcattctcatgtgatatgcccc 23709531  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 23728027 - 23727987
Alignment:
Q  177 tcattctcacatataaatagcattctcatgtgatatgcccc 217  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  23728027 tcattctcatatataactatcattctcatgtgatatgcccc 23727987  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 23746483 - 23746443
Alignment:
Q  177 tcattctcacatataaatagcattctcatgtgatatgcccc 217  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  23746483 tcattctcatatataactatcattctcatgtgatatgcccc 23746443  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 8979 - 8927
Alignment:
Q  166 atttattctcttcattctcacatataaatagcattctcatgtgatatgccccc 218  Q
    ||||||||||  |||||||||||| |||   ||||||||||||||||||||||    
T  8979 atttattctcaccattctcacatacaaaagccattctcatgtgatatgccccc 8927  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 236419 - 236471
Alignment:
Q  166 atttattctcttcattctcacatataaatagcattctcatgtgatatgccccc 218  Q
    ||||||||||  |||||||||||| |||   ||||||||||||||||||||||    
T  236419 atttattctcaccattctcacatacaaaagccattctcatgtgatatgccccc 236471  T

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