View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7529_low_2 (Length: 265)
Name: NF7529_low_2
Description: NF7529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7529_low_2 |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 20405911 - 20405657
Alignment:
| Q |
13 |
gttggaaaaatcaccattagaaaatacaattttctagctt----taaatataagagcacacaaattcatttcattaagcaatagtaaaactcttaaaaat |
108 |
Q |
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||||||| ||||||||| | |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20405911 |
gttggaagaatcaccatcaaaaaataca-ttttctagcttaaattaaatacaagagcacacaaattcatttcattaagcaatagtaaaactcttcaaaat |
20405813 |
T |
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| Q |
109 |
agcaaacagaaaataactcaacaatacaattaattcaaagtcatcataagacaatactcacacaacatattatacaacacgcaagaattaacacaaaatc |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20405812 |
agcaaacagaaaataactgaacaatacaattaattcaaagtcatcataagacaatactcacacaatatattatacaacacgcaagaattaacacaaaatc |
20405713 |
T |
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| Q |
209 |
aaacaagtaaaattgtcaaagataaacttacttttaaggatatgaaaccaagctttc |
265 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20405712 |
aaacaagt-aaattgtcaaagacaaacttacttttaaggatatgaaaccaagctttc |
20405657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 20411191 - 20410937
Alignment:
| Q |
13 |
gttggaaaaatcaccattagaaaatacaattttctagctt----taaatataagagcacacaaattcatttcattaagcaatagtaaaactcttaaaaat |
108 |
Q |
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||||||| ||||||||| | |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20411191 |
gttggaagaatcaccatcaaaaaataca-ttttctagcttaaattaaatacaagagcacacaaattcatttcattaagcaatagtaaaactcttcaaaat |
20411093 |
T |
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| Q |
109 |
agcaaacagaaaataactcaacaatacaattaattcaaagtcatcataagacaatactcacacaacatattatacaacacgcaagaattaacacaaaatc |
208 |
Q |
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| T |
20411092 |
agcaaacagaaaataactgaacaatacaattaattcaaagtcatcataagacaatactcacacaatatattatacaacacgcaagaattaacacaaaatc |
20410993 |
T |
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| Q |
209 |
aaacaagtaaaattgtcaaagataaacttacttttaaggatatgaaaccaagctttc |
265 |
Q |
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| T |
20410992 |
aaacaagt-aaattgtcaaagacaaacttacttttaaggatatgaaaccaagctttc |
20410937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 20453216 - 20453107
Alignment:
| Q |
13 |
gttggaaaaatcaccattagaaaatacaattttctagctt----taaatataagagcacacaaattcatttcattaagcaatagtaaaactcttaaaaat |
108 |
Q |
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||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20453216 |
gttggaagaatcaccatcagaaaataca-ttttctagcttaaattaaatataagagcacacaaattcatttcattaagcaatagtaaaactcttaaaaat |
20453118 |
T |
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| Q |
109 |
agcaaacagaa |
119 |
Q |
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||||||||||| |
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| T |
20453117 |
agcaaacagaa |
20453107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 11970649 - 11970786
Alignment:
| Q |
127 |
caacaatacaattaattcaaagtcatcataagacaatactcacacaacatattatacaacacgcaagaattaacacaaaatcaaacaagtaaaattgtca |
226 |
Q |
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|||||||||||| || ||||| |||||||||| ||| ||| |||| |||||||| | || || | |||| |||||| |||||||||| |||||||| |
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| T |
11970649 |
caacaatacaatcaaatcaaaaccatcataagaaaatgatcatacaatatattatatagcatacatgtattatcacaaattcaaacaagt-aaattgtcg |
11970747 |
T |
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| Q |
227 |
aagataaacttacttttaaggatatgaaaccaagctttc |
265 |
Q |
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||| ||||||||||| || ||| ||||||||||||| |
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| T |
11970748 |
tagagaaacttactttcaacaatacaaaaccaagctttc |
11970786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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