View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7529_low_3 (Length: 238)
Name: NF7529_low_3
Description: NF7529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7529_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 5985319 - 5985102
Alignment:
| Q |
16 |
aatatcttgcatgctacaatttgtctttacatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacatgatcgacatttaattttcgga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5985319 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacataatcgacatttaattttcgga |
5985220 |
T |
|
| Q |
116 |
agggagtacttttataaggagcctacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5985219 |
agggagtacttttataaggagcggacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
5985120 |
T |
|
| Q |
216 |
tgcactcacaggttctgc |
233 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
5985119 |
tgcactcacagtttctgc |
5985102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 5961013 - 5960926
Alignment:
| Q |
139 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacag |
226 |
Q |
| |
|
||||||| ||| | ||||||| || |||||||||||||||||||| ||||| |||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
5961013 |
taccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattgaagtcaccacctcagtgcactcacag |
5960926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 5949661 - 5949569
Alignment:
| Q |
139 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacaggttct |
231 |
Q |
| |
|
||||||| ||| ||||||||| || |||||||||||||||||||| |||| |||||| |||| |||||||||| |||| |||||||| |||| |
|
|
| T |
5949661 |
taccttttatcaattttccaaaaacctttatattgggccaccattgtacaatttccacattgagttcaccaccttagtgtactcacagtttct |
5949569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 5921783 - 5921684
Alignment:
| Q |
139 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttg-----aattcaccacctcagtgcactcacaggttctgc |
233 |
Q |
| |
|
||||||| |||| || ||||| || |||||||||||||||||||| |||||||| | ||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
5921783 |
taccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagtttctgc |
5921684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 30080693 - 30080761
Alignment:
| Q |
26 |
atgctacaatttgtctttacatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacat |
94 |
Q |
| |
|
|||||||||||| |||||| || | |||||| || ||||||||||||||||| || |||| ||||||| |
|
|
| T |
30080693 |
atgctacaatttatctttagatattagtagaaaaatatgatcaaagtatgttacgtgaatagtgcacat |
30080761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University