View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7530_low_3 (Length: 423)
Name: NF7530_low_3
Description: NF7530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7530_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 38533069 - 38533469
Alignment:
| Q |
19 |
aacccagcttcgtgaagccaacaaactcatctcctcctaccgcaaggaacctatgtgttcaccttctaaagcttttctacgtggaaacaaagcatgcaag |
118 |
Q |
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| T |
38533069 |
aacccagcttcgtgaagccagcaaactcatctcctcctaccgcaaggaacctatgtgttcaccttctaaagcttttctacgtggaaacaaagcatgcaag |
38533168 |
T |
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| Q |
119 |
cttgcgcttgagaatttacccgatgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaa |
218 |
Q |
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| T |
38533169 |
cttgcgcttgagaatttacccgatgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaa |
38533268 |
T |
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| Q |
219 |
tggcggcggtgttttcagctgctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaact |
318 |
Q |
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| T |
38533269 |
tggcggcggtgttttcagctgctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaact |
38533368 |
T |
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| Q |
319 |
ttatgctgatgagtttctttgtaagaagaatttggttaaaggtgttggaaggctttggcattttcagatagcaccgtttaatggcacaggttctgctcgt |
418 |
Q |
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| T |
38533369 |
ttatgctgatgagtttctttgtaagaagaatttggttaaaggtgttggaaggctttggcattttcagatagcaccgtttaatggcactgattctcctcgt |
38533468 |
T |
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| Q |
419 |
t |
419 |
Q |
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| T |
38533469 |
t |
38533469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 140 - 378
Target Start/End: Complemental strand, 34715272 - 34715034
Alignment:
| Q |
140 |
gatgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctg |
239 |
Q |
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| T |
34715272 |
gatgagatttacgaaacggagtgggatttgataatgatcgatgcgccgagaggttatttcgcggaggcgccggggagaatggcggcgatattttcaatga |
34715173 |
T |
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| Q |
240 |
ctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttg |
339 |
Q |
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| T |
34715172 |
cggtgatggcgagaaatagaaaaggttccggtgtgacgcacgtgtttttgcatgatgtggatcggaaggttgagaaagtttatgccgaagaatttctttg |
34715073 |
T |
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| Q |
340 |
taagaagaatttggttaaaggtgttggaaggctttggca |
378 |
Q |
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| T |
34715072 |
taggaagaatttggtgaaaggtgttggtaggctttggca |
34715034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 10189258 - 10189323
Alignment:
| Q |
269 |
ggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagttt |
334 |
Q |
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| T |
10189258 |
ggtgtgacgcatgtgtttcttcatgatgtggatagggaggttgagaaactttatgctaaggagttt |
10189323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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