View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7531_low_1 (Length: 448)

Name: NF7531_low_1
Description: NF7531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7531_low_1
NF7531_low_1
[»] chr4 (37 HSPs)
chr4 (1-430)||(5750538-5750968)
chr4 (35-394)||(56094114-56094476)
chr4 (41-379)||(867471-867812)
chr4 (41-292)||(42679191-42679442)
chr4 (100-394)||(24194911-24195200)
chr4 (98-394)||(22097142-22097431)
chr4 (98-276)||(47312131-47312308)
chr4 (66-234)||(48827624-48827790)
chr4 (56-231)||(51906005-51906177)
chr4 (100-394)||(18521263-18521560)
chr4 (116-227)||(26635908-26636018)
chr4 (197-309)||(35292995-35293108)
chr4 (96-341)||(51983377-51983621)
chr4 (101-328)||(13204829-13205041)
chr4 (138-226)||(40549350-40549437)
chr4 (66-161)||(25856972-25857067)
chr4 (298-389)||(48546759-48546850)
chr4 (143-276)||(24273985-24274119)
chr4 (184-308)||(2818943-2819068)
chr4 (143-328)||(26003779-26003959)
chr4 (99-353)||(26644827-26645081)
chr4 (161-219)||(600532-600590)
chr4 (169-238)||(10402112-10402181)
chr4 (264-389)||(23480643-23480767)
chr4 (99-200)||(52646778-52646878)
chr4 (96-227)||(4154330-4154459)
chr4 (168-231)||(14352264-14352327)
chr4 (56-239)||(23441516-23441691)
chr4 (59-141)||(40283853-40283936)
chr4 (107-210)||(48831655-48831757)
chr4 (161-231)||(7555718-7555788)
chr4 (333-379)||(24273919-24273965)
chr4 (99-141)||(47809056-47809098)
chr4 (114-227)||(48685772-48685884)
chr4 (179-259)||(18743010-18743091)
chr4 (198-231)||(25857083-25857116)
chr4 (339-383)||(3161385-3161429)
[»] chr3 (18 HSPs)
chr3 (1-430)||(18680576-18681006)
chr3 (41-394)||(16194073-16194427)
chr3 (47-394)||(8795534-8795881)
chr3 (58-394)||(29306180-29306507)
chr3 (56-393)||(43369768-43370101)
chr3 (243-394)||(42339903-42340054)
chr3 (108-394)||(33282710-33282997)
chr3 (41-389)||(36260781-36261108)
chr3 (99-231)||(29490997-29491128)
chr3 (134-308)||(2757339-2757513)
chr3 (114-231)||(30537507-30537621)
chr3 (96-176)||(22224029-22224108)
chr3 (169-259)||(17549728-17549819)
chr3 (99-162)||(20524556-20524619)
chr3 (184-227)||(22223785-22223828)
chr3 (296-389)||(47731195-47731288)
chr3 (106-155)||(39028708-39028757)
chr3 (187-231)||(48393893-48393937)
[»] chr1 (26 HSPs)
chr1 (41-379)||(31165617-31165956)
chr1 (41-394)||(31064937-31065296)
chr1 (44-430)||(15183573-15183961)
chr1 (41-394)||(27458241-27458588)
chr1 (41-391)||(35306991-35307341)
chr1 (191-391)||(39984737-39984938)
chr1 (191-394)||(14579172-14579374)
chr1 (238-394)||(11581528-11581687)
chr1 (56-200)||(14578442-14578586)
chr1 (99-394)||(26801264-26801557)
chr1 (41-371)||(15939102-15939432)
chr1 (41-150)||(11580590-11580699)
chr1 (76-314)||(2765463-2765696)
chr1 (143-227)||(4080395-4080478)
chr1 (268-391)||(20710743-20710866)
chr1 (76-220)||(48496985-48497128)
chr1 (99-198)||(23532831-23532929)
chr1 (255-389)||(6568043-6568177)
chr1 (143-227)||(30440642-30440725)
chr1 (56-231)||(15947498-15947672)
chr1 (56-231)||(28292285-28292459)
chr1 (123-285)||(32893687-32893849)
chr1 (178-227)||(21686334-21686383)
chr1 (186-259)||(42241960-42242033)
chr1 (335-379)||(15947760-15947804)
chr1 (335-379)||(28292547-28292591)
[»] chr8 (30 HSPs)
chr8 (41-394)||(11175319-11175672)
chr8 (57-394)||(15175047-15175382)
chr8 (41-394)||(35170766-35171119)
chr8 (76-302)||(43120648-43120875)
chr8 (69-387)||(31447013-31447331)
chr8 (41-227)||(26600835-26601020)
chr8 (213-394)||(1824241-1824422)
chr8 (213-394)||(1858686-1858867)
chr8 (47-355)||(26916095-26916403)
chr8 (56-175)||(32350815-32350933)
chr8 (56-175)||(32367476-32367594)
chr8 (294-379)||(9555212-9555297)
chr8 (102-227)||(4187325-4187449)
chr8 (76-379)||(4606082-4606382)
chr8 (178-379)||(45537752-45537952)
chr8 (56-207)||(1823403-1823551)
chr8 (56-207)||(1857848-1857996)
chr8 (97-216)||(14636679-14636794)
chr8 (96-203)||(10839657-10839763)
chr8 (202-371)||(10839910-10840079)
chr8 (292-394)||(16816200-16816302)
chr8 (161-361)||(40112689-40112892)
chr8 (316-367)||(26601064-26601115)
chr8 (188-314)||(12076565-12076692)
chr8 (202-288)||(37294978-37295065)
chr8 (107-217)||(9550609-9550716)
chr8 (159-231)||(14628946-14629018)
chr8 (336-394)||(43915680-43915738)
chr8 (146-227)||(8149813-8149893)
chr8 (161-214)||(28452044-28452097)
[»] chr2 (24 HSPs)
chr2 (41-394)||(5187740-5188094)
chr2 (41-394)||(9298600-9298953)
chr2 (41-379)||(10221498-10221838)
chr2 (56-394)||(18704550-18704888)
chr2 (56-394)||(21436885-21437221)
chr2 (58-277)||(43080828-43081044)
chr2 (96-307)||(37817597-37817809)
chr2 (56-227)||(83555-83723)
chr2 (98-305)||(33428814-33429019)
chr2 (41-394)||(1130598-1130937)
chr2 (167-361)||(17200687-17200882)
chr2 (161-227)||(11862316-11862382)
chr2 (167-276)||(14201473-14201583)
chr2 (99-227)||(35347227-35347358)
chr2 (96-231)||(45707221-45707355)
chr2 (94-213)||(36472374-36472491)
chr2 (292-379)||(931122-931209)
chr2 (76-227)||(41959698-41959848)
chr2 (281-369)||(41959855-41959947)
chr2 (199-307)||(7816961-7817069)
chr2 (164-225)||(9158759-9158820)
chr2 (170-227)||(35494086-35494143)
chr2 (143-227)||(43229275-43229361)
chr2 (99-159)||(35341851-35341911)
[»] chr6 (5 HSPs)
chr6 (41-391)||(11751788-11752136)
chr6 (99-394)||(2391390-2391685)
chr6 (121-394)||(11785667-11785938)
chr6 (41-389)||(10479507-10479854)
chr6 (264-393)||(10629020-10629148)
[»] chr7 (22 HSPs)
chr7 (57-389)||(34595909-34596241)
chr7 (220-379)||(29407998-29408158)
chr7 (41-227)||(47084935-47085121)
chr7 (224-394)||(47084740-47084909)
chr7 (96-227)||(38582236-38582366)
chr7 (290-366)||(39983558-39983634)
chr7 (108-311)||(32438064-32438267)
chr7 (98-208)||(33407187-33407291)
chr7 (96-227)||(3839277-3839405)
chr7 (107-219)||(30053847-30053958)
chr7 (292-391)||(37204698-37204797)
chr7 (99-231)||(43230828-43230956)
chr7 (118-227)||(46435576-46435688)
chr7 (281-394)||(32450396-32450509)
chr7 (195-311)||(32711248-32711365)
chr7 (191-231)||(9003588-9003628)
chr7 (199-394)||(32297269-32297464)
chr7 (161-276)||(33589262-33589378)
chr7 (184-227)||(38362622-38362665)
chr7 (161-227)||(44594342-44594408)
chr7 (294-379)||(30053685-30053770)
chr7 (190-231)||(45123141-45123182)
[»] chr5 (16 HSPs)
chr5 (41-394)||(16600313-16600670)
chr5 (96-384)||(33401534-33401813)
chr5 (264-394)||(27499433-27499562)
chr5 (116-217)||(34367194-34367294)
chr5 (101-385)||(5473948-5474231)
chr5 (99-227)||(5552512-5552639)
chr5 (57-227)||(36267944-36268110)
chr5 (285-393)||(932479-932587)
chr5 (194-257)||(8822379-8822443)
chr5 (186-289)||(10099625-10099729)
chr5 (143-213)||(932643-932711)
chr5 (168-227)||(32424222-32424281)
chr5 (99-141)||(4248965-4249007)
chr5 (98-195)||(5177433-5177529)
chr5 (99-156)||(17053558-17053615)
chr5 (112-227)||(21076304-21076415)
[»] scaffold0001 (1 HSPs)
scaffold0001 (41-391)||(508077-508412)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 5750968 - 5750538
Alignment:
Q  1 gaagaaaaacgacaaagttcaccaacgaggctcgcatcggttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5750968 gaagaaaaacgacaaagttcaccaacgaggctcgcatcggttcagccaacatcgctaaaaagtgcttataaaccttttaacattaagatggtggatccaa 5750869  T
Q  101 aagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaata 200  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5750868 aagtgcttatgacaaccaacatgattatttatacacattttcttcttcttgtttttgaatttcaagcctaatttcatatatagatattttatcaacaata 5750769  T
Q  201 ttataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactta 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5750768 ttataaatcaagtaatcgatcaattttgtttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactta 5750669  T
Q  301 acattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataacc-nnnn 399  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  5750668 acattaaacatccatacaaacactttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataaccaaaaa 5750569  T
Q  400 nnnttaaaggactaactttttatattcatgt 430  Q
       ||||||||||||||||||||||||||||    
T  5750568 aaattaaaggactaactttttatattcatgt 5750538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 394
Target Start/End: Complemental strand, 56094476 - 56094114
Alignment:
Q  35 catcggttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatat 134  Q
    ||||| |||||||||| ||  ||||| ||||||||||||| ||||||||||||||||| | | |||||||| ||||||||||||||||||||| |||||     
T  56094476 catcgtttcagccaacttcattaaaatgtgcttatagaccatttaacattaagatggtaggttcaaaagtgtttatgacatcaaacatgattacttatac 56094377  T
Q  135 aca-ttttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttta-tttg 232  Q
    ||| ||||||||||||| ||||||||||| ||||||||||||| | ||| |||||| |||||||| ||||||||||||||||| | ||||||||| ||||    
T  56094376 acatttttcttcttcttatttttgaattt-aagcctaattttacagataaatatttgatcaacaacattataaatcaagtaataggtcaattttattttg 56094278  T
Q  233 aatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaac--gctttttga 330  Q
    ||| ||||| |||||||||| ||||||||  |||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||    |||||||    
T  56094277 aataaagaccgaataacacatctatgagcactagttttgagagcagtgaatttggacaaatcaacttaacattaaacatccacacaaacattttttttga 56094178  T
Q  331 ttgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
     | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  56094177 cttagtttgatgaaattaggataatggtgcaattattttataacttaaatgaccaatttataac 56094114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 41 - 379
Target Start/End: Original strand, 867471 - 867812
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacatt-aagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacatt 139  Q
    ||||| |||| ||| ||||||||| ||||||||  ||||||||| |||||||| | | ||||| | |||||||||||||||||||||| ||||| |||||    
T  867471 ttcagtcaacttcgttaaaaagtgtttatagactatttaacatttaagatggtaggttcaaaaatacttatgacatcaaacatgattacttataaacatt 867570  T
Q  140 ttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaa 238  Q
    ||| ||||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||||||||||| |||||| ||| ||||  ||||||||||    
T  867571 ttcctcttcttgtttttgaatttcaagcctaattttacata---atatttgatcaacaatattataaatcaaataatcggtcatttttgttttgaatcaa 867667  T
Q  239 gacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagttt 338  Q
    ||| |||||||||   |||||||| || |||||| |  ||| ||||||||||||| ||||||||| ||||||||||   |||| |||||||||| |||||    
T  867668 gaccgaataacactattatgagctctacttttgatataaatgaatttggacaaactaacttaacagtaaacatccacgtaaacactttttgattaagttt 867767  T
Q  339 gatgaaattagga----taatggtgcaaatattttattacttaaa 379  Q
    |||||||||||||    ||||| |||||||||||||| |||||||    
T  867768 gatgaaattaggacaattaatgatgcaaatattttatgacttaaa 867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 41 - 292
Target Start/End: Original strand, 42679191 - 42679442
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||||||| |||||||||||||| || | |||||||||| |||| ||||||||||||||||  |||| | ||||    
T  42679191 ttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatagtaggtccaaaagtgtttataacatcaaacatgattacgtatacatattt 42679290  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaag 239  Q
    | ||||| || |||||||| |||||||||||||||| | ||| |||||| ||| ||||  |||||||||||||||||| ||||||||  ||||||||||     
T  42679291 ttttcttattatttttgaa-ttcaagcctaattttacagataaatatttgatcgacaacgttataaatcaagtaatcggtcaattttgttttgaatcaaa 42679389  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaa 292  Q
    || | ||||||||||| |||||  ||||||| |||||| | ||||||||||||    
T  42679390 accgtataacacacctttgagcactagttttaagagcagtgaatttggacaaa 42679442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 100 - 394
Target Start/End: Original strand, 24194911 - 24195200
Alignment:
Q  100 aaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaat 199  Q
    |||||| ||||||||||||||||||||| ||| | |||||||||||||  |    ||||||| ||||| |||||||| | ||| |||| | |||||| ||    
T  24194911 aaagtgtttatgacatcaaacatgattacttacacacattttcttcttaat----ttgaatt-caagcttaattttaca-ataaatatataatcaacgat 24195004  T
Q  200 attataaatcaagtaatcgatcaattttatttgaa-tcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaact 298  Q
    ||||||||| |||||||  ||||||||| ||| || ||||||| ||||||||||| | ||| |  || |||||||||  || || ||||||| |||||||    
T  24195005 attataaattaagtaattaatcaattttgtttcaagtcaagactgaataacacacttttgaaccctaattttgagagtgatgaaattggacataccaact 24195104  T
Q  299 taacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||| |||| | || | |||| |||||| | ||||||||| |||| ||  ||||||||||  ||||||||| ||||||||||||||||||||||    
T  24195105 taacatcaaacgttcacataaacactttttaactgagtttgaagaaaatataataatggtgccgatattttatgacttaaatgaccaatttataac 24195200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 98 - 394
Target Start/End: Original strand, 22097142 - 22097431
Alignment:
Q  98 caaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaaca 197  Q
    |||||| |||| ||||||||| | |||||| |||   | ||||| ||||||||| ||||||||| |||| ||||||||| | ||| |||||| |||||||    
T  22097142 caaaagggcttgtgacatcaaccttgattacttacgcaaatttttttcttcttggttttgaatt-caagactaattttaaagataaatatttcatcaaca 22097240  T
Q  198 atattataaatcaagtaatcgatcaatttta--tttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaacca 295  Q
    ||||||||  |||||||||||| ||||||    ||| ||||||||| |||| | |||||||| | | ||||||||||||| ||| |||||||||| ||      
T  22097241 atattata--tcaagtaatcgaacaatttcgcttttaaatcaagactgaatgatacacctatcaaccttagttttgagaggaataaatttggacatactg 22097338  T
Q  296 acttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||| |||||   |||| |||||||||||||||||||||||||| ||| || ||| |      ||||||||| | ||||||||||||||||||||||    
T  22097339 acttaaaattaagtttccacacaaacgctttttgattgagtttgataaaagtaagatca------aaatattttctaacttaaatgaccaatttataac 22097431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 98 - 276
Target Start/End: Original strand, 47312131 - 47312308
Alignment:
Q  98 caaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaaca 197  Q
    ||||| || |||| ||||||||| |||||  || | |||||||||||||||||||||||||||| ||||| | |||||| | ||| |||||| ||||||     
T  47312131 caaaaatgtttataacatcaaacgtgattgcttgtgtacattttcttcttcttgtttttgaatt-caagcttgattttacagataaatatttcatcaacg 47312229  T
Q  198 atattataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatgagctttagttttgagagc 276  Q
    |||||||| | |||||||||||||| |||| | | ||  ||||| |||||| |||| ||||| | ||||||||||||||    
T  47312230 atattatagagcaagtaatcgatcagttttgtgtcaaataagactgaataatacacatatgaaccttagttttgagagc 47312308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 48827790 - 48827624
Alignment:
Q  66 ttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaa 165  Q
    ||||| ||| |||||| || ||||||| | | |||||||| |||||||||||| |||||||| ||||  ||||||| |||||||||||||| |||| |||    
T  48827790 ttataaaccatttaacgttgagatggtagcttcaaaagtgtttatgacatcaa-catgattacttatgcacattttattcttcttgtttttaaatt-caa 48827693  T
Q  166 gcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaa 234  Q
    |  |||||||| | ||  |||||| ||| ||||||||||||||||||||||  || |||||||||||||    
T  48827692 gtataattttacaaattaatatttcatctacaatattataaatcaagtaatatattaattttatttgaa 48827624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 51906005 - 51906177
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||| |||||||  |||||||||| ||| ||| | |||| |||| ||||| ||||  |||||||||| ||| | ||||||||||||||| |||||    
T  51906005 taaaaagtgtttataga--ttttaacattgagacggtaggtccagaagtacttattacatataacatgattacttacacacattttcttcttctagtttt 51906102  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||| ||| |||||| ||   ||| |||||| |||||||| ||||||||  |||| |||||||||||| ||||    
T  51906103 tgaattt-aagtctaattgtaccgataaatatttcatcaacaacattataaacaaagtgatcgatcaatttcattt 51906177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 394
Target Start/End: Original strand, 18521263 - 18521560
Alignment:
Q  100 aaagtgcttatgacatcaaacatgattatttatatacattttc-ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    |||||||||| |||||||||||||  |  ||| | |||||||  |||||||| |||||||||| |||||||||||||| | ||| |||||  ||||||||    
T  18521263 aaagtgcttacgacatcaaacatgtatgcttacacacatttttattcttcttatttttgaatt-caagcctaattttacaaataaatattccatcaacaa 18521361  T
Q  199 tattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaac 297  Q
    ||||||||||||||||    ||||||||| |||  ||||||||  ||||||||||| | ||| |  |||||||||||||  | || | |||||   ||||    
T  18521362 tattataaatcaagtatattatcaattttgtttcaaatcaagatcgaataacacacatgtgaaccatagttttgagagccctgaactaggacatgtcaac 18521461  T
Q  298 ttaac--attaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||  |||||||  |||   |||  ||||| | |||||||| |||||| || |||| ||||||| ||||||||| ||||| |||  |||||||||||    
T  18521462 ttaacatattaaacgcccacctaaagacttttcggttgagtttaatgaaaataagatagtggtgcatatattttatgacttatatgttcaatttataac 18521560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 26636018 - 26635908
Alignment:
Q  116 caaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaa 215  Q
    |||| ||||||||||||||||||||||||||| ||||||   |||| ||| | |||||||| | ||| ||||||||||||||| |||||| |||||||||    
T  26636018 caaagatgattatttatatacattttcttcttattgtttcacaatt-caatcataattttacagataaatattttatcaacaacattatagatcaagtaa 26635920  T
Q  216 tcgatcaatttt 227  Q
    | ||||||||||    
T  26635919 ttgatcaatttt 26635908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 35292995 - 35293108
Alignment:
Q  197 aatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaacca 295  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||| |||||| |||  ||||| |  || |||||||||| || ||||| |||| ||||    
T  35292995 aatattataaatcaagtaatcgatcaattttgtttcaaatcaagactgaataatacatttatgaaccctaattttgagagcgatgaatttagacatacca 35293094  T
Q  296 acttaacattaaac 309  Q
    ||||||||||||||    
T  35293095 acttaacattaaac 35293108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 341
Target Start/End: Original strand, 51983377 - 51983621
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    |||||||||  ||||||||||||| ||| ||| ||||  ||||||| ||||||  ||||||||| ||||| | |||||||| | ||| |||||||||       
T  51983377 tccaaaagtatttatgacatcaaatatggttacttatgcacattttgttcttcaagtttttgaa-ttcaaacttaattttacagataaatattttat--- 51983472  T
Q  196 caatattataaatcaagtaatcgatcaattttat-ttgaatcaagacagaataacacacctatg-agctttagttttgagagcaattaatttggacaaac 293  Q
    ||||||||||||| |||||||||||||| ||| | |  ||||||||  |||||| |||| |||| | |  || |||||||| || |||||||| ||| ||    
T  51983473 caatattataaattaagtaatcgatcaactttgtgtcaaatcaagatcgaataatacacttatgaacccctaattttgagaacagttaatttgaacatac 51983572  T
Q  294 caacttaac-attaaacatccatacaaacgctttttgattgagtttgat 341  Q
    ||||||||| |||||| ||| | | ||||  ||||| ||||||||||||    
T  51983573 caacttaacaattaaatatctacataaacattttttaattgagtttgat 51983621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 328
Target Start/End: Original strand, 13204829 - 13205041
Alignment:
Q  101 aagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaata 200  Q
    ||||| |||||||||||||||| |||| ||| || |||||||||||||||||||||||| ||||||||||             |||||| |||||||| |    
T  13204829 aagtgtttatgacatcaaacataattacttacatgcattttcttcttcttgtttttgaa-ttcaagccta-------------atatttcatcaacaaca 13204914  T
Q  201 ttataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactt 299  Q
    |||||||||||||||| |||||||||| |||  ||| || |  |||||| |||||||||| || ||||||| ||||   | ||||| |||| || || ||    
T  13204915 ttataaatcaagtaatggatcaattttctttcaaattaaaattgaataatacacctatgaactctagttttaagag--gtgaatttagacatactaattt 13205012  T
Q  300 aacattaaacatccatacaaacgcttttt 328  Q
    |||||| ||| |||||| |||| ||||||    
T  13205013 aacattgaacgtccatataaacacttttt 13205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 40549437 - 40549350
Alignment:
Q  138 ttttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattt 226  Q
    ||||||| |||||||||  ||||| ||| | |||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  40549437 ttttctttttcttgtttccgaatt-caatcataattttacaaataaatattttatcaacaatattataagtcaagtaatcgatcaattt 40549350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 25856972 - 25857067
Alignment:
Q  66 ttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatt 161  Q
    |||| |||| ||||||||| || |||| ||||||||| || |||||||||||||||||||||||||   ||||| ||| ||| ||| |||||||||    
T  25856972 ttatggaccatttaacattgaggtggtagatccaaaaatgtttatgacatcaaacatgattatttacgcacattctctacttattgattttgaatt 25857067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 48546850 - 48546759
Alignment:
Q  298 ttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaattt 389  Q
    ||||||| |||| |||| | |||| |||||| | | |||||||||||| ||||||||||||||||||||||||| | ||||| || ||||||    
T  48546850 ttaacatcaaacgtccacataaacactttttaactaagtttgatgaaaataggataatggtgcaaatattttatgatttaaaggatcaattt 48546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 24274119 - 24273985
Alignment:
Q  143 ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagac 241  Q
    |||||||||||||||||||  |||  |||||||| | ||| |||||| ||||   |||||||||||| | ||| |||||||||||||||  |||||||||    
T  24274119 ttcttcttgtttttgaattcaaagtataattttacagataaatatttcatcattgatattataaatccaataaacgatcaattttatttcaaatcaagac 24274020  T
Q  242 agaataacacacctatgagctttagttttgagagc 276  Q
      ||||  |||| |||||| | |||||||||||||    
T  24274019 taaatattacacatatgagttctagttttgagagc 24273985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 2818943 - 2819068
Alignment:
Q  184 atattttatcaacaatattataaatcaagtaatcgatcaattttatttgaatc-aagacagaataacacacctatgagctttagttttgagagcaattaa 282  Q
    ||||||||| ||||| |||||||||||||||||| |   |||| |||| || | ||||| | || | |||| ||||| | ||||||||||||||||| ||    
T  2818943 atattttatgaacaacattataaatcaagtaatcaaatgatttcatttcaaactaagaccgtatgatacacatatgaacattagttttgagagcaatgaa 2819042  T
Q  283 tttggacaaaccaacttaacattaaa 308  Q
    ||| ||| |||||||||| |||||||    
T  2819043 tttcgaccaaccaacttagcattaaa 2819068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 26003779 - 26003959
Alignment:
Q  143 ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt--gaatcaaga 240  Q
    |||||||| |||||||||| ||||| |||||||| | ||| |||||| ||||||||||||||     ||||||||||||||||| ||||   ||||||||    
T  26003779 ttcttcttatttttgaatt-caagcttaattttacagataaatatttcatcaacaatattat-----aagtaatcgatcaatttaatttcaaaatcaaga 26003872  T
Q  241 cagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgcttttt 328  Q
    | | |||| |||| ||||| | |||||| ||||||   | || ||| | | |||||||||||||||||| |||| | |||| ||||||    
T  26003873 ctg-ataatacacatatgaaccttagttgtgagagatgtgaaattgaaaataccaacttaacattaaacttccacataaacacttttt 26003959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 353
Target Start/End: Complemental strand, 26645081 - 26644827
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    |||||| |||| ||||||||||||||||| ||  | | ||||||||| | ||||||||||| |||||| |||||||||   ||| |||||| |||||  |    
T  26645081 aaaagttcttacgacatcaaacatgattacttgcacatattttcttccttttgtttttgaa-ttcaagtctaattttaccgataaatatttcatcaatga 26644983  T
Q  199 tattataaatcaagtaatcgatcaattttatttgaa-tcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaac 297  Q
    | |||||||  ||||||| | |||||||  | | || |||| || | |||| |||| ||||| |  |||| ||||||  | | |||||||||| |||||     
T  26644982 tgttataaagaaagtaataggtcaatttagtgtcaagtcaaaactggataatacacatatgaacactagtcttgagattagtgaatttggacataccaat 26644883  T
Q  298 ttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggata 353  Q
    |||||||| ||  |||| | |||| |||||| | | |||||||||||| |||||||    
T  26644882 ttaacattgaatgtccaaataaacactttttaactaagtttgatgaaaataggata 26644827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 600590 - 600532
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcga 219  Q
    ||||||| |||||||| ||||| | |||| ||||||||||||| |||||||||||||||    
T  600590 ttcaagcttaattttacatataaacatttcatcaacaatattacaaatcaagtaatcga 600532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 10402112 - 10402181
Alignment:
Q  169 taattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaa 238  Q
    |||||||||| ||| ||||| ||||||||| || ||||||||||||||||||  |||| |||| ||||||    
T  10402112 taattttatagataaatattatatcaacaacatgataaatcaagtaatcgattgatttgatttaaatcaa 10402181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 23480643 - 23480767
Alignment:
Q  264 tagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaa 363  Q
    |||||||||||||| | |||||| ||  ||||||||||||||||||||| | | |||| |||||| |   ||||||| ||||  ||| |||||| | |||    
T  23480643 tagttttgagagcagtgaatttgaacccaccaacttaacattaaacatcaacataaacactttttaaccaagtttgaagaaa-gagggtaatggcgaaaa 23480741  T
Q  364 tattttattacttaaatgaccaattt 389  Q
    |||||||| | ||||| |||||||||    
T  23480742 tattttataaattaaaggaccaattt 23480767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 52646878 - 52646778
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    ||||||| |||||| ||||| |||||||| ||| | ||||||||||||| || ||||| || ||||||| |||||||| | ||| ||| || ||||||||    
T  52646878 aaaagtgtttatgatatcaagcatgattagttaaacacattttcttcttattattttttaa-ttcaagcttaattttagagataaataattcatcaacaa 52646780  T
Q  199 ta 200  Q
    ||    
T  52646779 ta 52646778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 4154459 - 4154330
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    |||||||||| |||||| ||||||||| || |  |  | | ||||||||||||||  ||||||||| ||||| |||||||| | |||  | |||||||||    
T  4154459 tccaaaagtgtttatgatatcaaacataatcacatgcacatattttcttcttcttacttttgaatt-caagc-taattttacagataatttttttatcaa 4154362  T
Q  196 caatattataaatcaagtaatcgatcaatttt 227  Q
      | |||||||||||||||||| |||||||||    
T  4154361 tgacattataaatcaagtaatctatcaatttt 4154330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 14352264 - 14352327
Alignment:
Q  168 ctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||||| | ||| |||||| |||| ||||||||| |||||||||||| ||| |||||||||    
T  14352264 ctaattttacagataaatatttcatcagcaatattattaatcaagtaatctatcgattttattt 14352327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 23441516 - 23441691
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||  ||||||| | ||||||||| |||||||  |||||||| || ||  ||||||||||||||||| |||   | ||||||||| | |||||||    
T  23441516 taaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgttt--gacatcaaacatgattacttacgcatattttcttcct-ttgtttt 23441612  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaag 239  Q
    |||||| ||| | |||||||| ||  | |     ||||||||| |||||||||||| ||||| || |||||||||| |||||||    
T  23441613 tgaatt-caatcttaattttacattcatac----tatcaacaacattataaatcaaataatctattaattttatttcaatcaag 23441691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 40283853 - 40283936
Alignment:
Q  59 aaagtgcttatagaccttttaacattaagatggtggatccaaaa-gtgcttatgacatcaaacatgattatttatatacatttt 141  Q
    ||||||||||  |||||||||||||| || |||  | ||||||| ||| |||||||| |||||||||||| ||| |||||||||    
T  40283853 aaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacatacatttt 40283936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 48831655 - 48831757
Alignment:
Q  107 ttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataa 206  Q
    |||||| | |||||||||||| ||| ||| ||||| ||||| |||||||| || || ||  ||||||||| ||||| |||||| ||| |||| |||||||    
T  48831655 ttatgataccaaacatgattacttacataaattttattcttattgtttttcaa-ttaaatactaattttacatataaatatttaatctacaacattataa 48831753  T
Q  207 atca 210  Q
    ||||    
T  48831754 atca 48831757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 7555718 - 7555788
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    |||||||||||||| | || || |||  | ||||| |||||||||||||||||||| ||| ||||||||||    
T  7555718 ttcaagcctaatttcacatgtaaataaatcatcaataatattataaatcaagtaattgattaattttattt 7555788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 24273965 - 24273919
Alignment:
Q  333 gagtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||||||    
T  24273965 gagtttgatgaaaataggataatgatgcagatattttatgacttaaa 24273919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 47809098 - 47809056
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacatttt 141  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||    
T  47809098 aaaagtgtttatgacgtcaaacatgattatttatatatatttt 47809056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 48685884 - 48685772
Alignment:
Q  114 atcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa-tattataaatcaag 212  Q
    |||||||||||| |||||  | ||||||||||||| | |||||||||| |||   |||||||| | ||| |||||| |||||||| |||||||||| ||     
T  48685884 atcaaacatgat-atttacctccattttcttcttcatatttttgaatt-caaaaataattttacaaataaatatttaatcaacaaatattataaataaaa 48685787  T
Q  213 taatcgatcaatttt 227  Q
    ||||| |||||||||    
T  48685786 taatcaatcaatttt 48685772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 18743091 - 18743010
Alignment:
Q  179 tatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatga 259  Q
    |||| |||||| || |||||||||| ||||||||||| ||||||||||  |||  ||||||||  ||||||||||| |||||    
T  18743091 tataaatatttcattaacaatattacaaatcaagtaaccgatcaatttagtttcaaatcaagattgaataacacacttatga 18743010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 25857083 - 25857116
Alignment:
Q  198 atattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||||||||||||||||||||| ||||||||    
T  25857083 atattataaatcaagtaatcgatcagttttattt 25857116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 3161429 - 3161385
Alignment:
Q  339 gatgaaattaggataatggtgcaaatattttattacttaaatgac 383  Q
    ||||||| ||||||||| |||||| |||||||| |||||||||||    
T  3161429 gatgaaaataggataattgtgcaagtattttatgacttaaatgac 3161385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 18681006 - 18680576
Alignment:
Q  1 gaagaaaaacgacaaagttcaccaacgaggctcgcatcggttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18681006 gaagaaaaacgacaaagttcaccaacgaggctcgcatcggttcagccaacatcgctaaaaagtgcttataaaccttttaacattaagatggtggatccaa 18680907  T
Q  101 aagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaata 200  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18680906 aagtgcttatgacaaccaacatgattatttatacacattttcttcttcttgtttttgaatttcaagcctaatttcatatatagatattttatcaacaata 18680807  T
Q  201 ttataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactta 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18680806 ttataaatcaagtaatcgatcaattttgtttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactta 18680707  T
Q  301 acattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataacc-nnnn 399  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  18680706 acattaaacatccatacaaacactttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataaccaaaaa 18680607  T
Q  400 nnnttaaaggactaactttttatattcatgt 430  Q
       ||||||||||||||||||||||||||||    
T  18680606 aaattaaaggactaactttttatattcatgt 18680576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 16194427 - 16194073
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||| | ||| ||||||    
T  16194427 ttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacgtgattactcatacacattt 16194328  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaag 239  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  16194327 tcttctttttgtttttgaatttcaagcctaattttacatataaatatttgatcaacaatattataaatcaagtaatcgatcaattttgttttgaatcaag 16194228  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    ||  ||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||| |||||||||||| | ||||  ||||||||||| ||||    
T  16194227 actaaataacacacctatgagctctagttttaagagctatgaatttggacaaaccaacttaatattaaacatccacaaaaacattttttgattgaatttg 16194128  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||| ||||    
T  16194127 atgaaattaggataatgatgcaaatattttatgatttaaaggaccaatttctaac 16194073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 47 - 394
Target Start/End: Complemental strand, 8795881 - 8795534
Alignment:
Q  47 caacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttct 146  Q
    |||| ||| ||||||||||||||| ||| ||||| ||||||||||| | ||||||||| ||||||||||||  |||||||||||||| ||||||||||||    
T  8795881 caacttcgttaaaaagtgcttataaaccatttaatattaagatggtaggtccaaaagtacttatgacatcatgcatgattatttatacacattttcttct 8795782  T
Q  147 tcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaa 245  Q
    | ||||||||||||||||| | |||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||  ||||||||||||| |||    
T  8795781 tattgtttttgaatttcaaacataattttacatataaatatttgatcaacaatattataaatcaagtaattgatcaattttgttttgaatcaagaccgaa 8795682  T
Q  246 taacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaa 345  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |  ||| |||||||||||||||||||||||    
T  8795681 taacacacttatgagctctagttttgagagcaatgaatttggacaaaccaacttaacattaaacatccaca-taacactttttgattgagtttgatgaaa 8795583  T
Q  346 ttaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  8795582 ttaggataatggtgcaaatattttatgacttaaaggacaaatttataac 8795534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 58 - 394
Target Start/End: Original strand, 29306180 - 29306507
Alignment:
Q  58 aaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttg 157  Q
    ||||||| ||||||||| ||||| ||||||||||| | | ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  29306180 aaaagtgtttatagaccatttaatattaagatggtaggttcaaaagtgcttatgacatcaaacattattacttatacacattttcttcttcttgtttttg 29306279  T
Q  158 aatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaataacacaccta 256  Q
    ||||||||||| ||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||    
T  29306280 aatttcaagccaaattttacatataaatatttgatcaaccatattataaatcaagtaatcgatcaattttgttttgaattaagatcgaataacacaccta 29306379  T
Q  257 tgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatg 356  Q
     || || |         || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29306380 cgacctct---------agaaatgaatttggacaaaccaacttaacattaaacatccatataaacgctttttgattaagtttgatgaaattaggataatg 29306470  T
Q  357 gtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||| ||||||||||| ||||||| ||||||||| ||||    
T  29306471 gtgtaaatattttatgacttaaa-gaccaatttgtaac 29306507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 56 - 393
Target Start/End: Original strand, 43369768 - 43370101
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||||||||||||| ||||||||||| |||||  ||||||||||  ||||||||||||||||||||| ||||| |||| |||||||| || ||||    
T  43369768 taaaaagtgcttatagaccatttaacattaatatggtaaatccaaaagtatttatgacatcaaacatgattacttatacacatattcttcttattatttt 43369867  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaataacacacc 254  Q
    |||| ||||||| |||||||| | ||| |||||| |||||||| ||||||||||  ||||||  ||||||||  |||| |||||||| ||||||||||||    
T  43369868 tgaa-ttcaagcataattttacaaataaatatttaatcaacaaaattataaatc--gtaatcagtcaattttgttttgtatcaagaccgaataacacacc 43369964  T
Q  255 tatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaa-cgctttttgattgagtttgatgaaattaggata 353  Q
    ||||| | ||||||||||||| | | |||||||||||| |||||   ||||||||||| | |||||    ||||||| | |||||||||||||||| | |    
T  43369965 tatgaacattagttttgagagtagtgaatttggacaaatcaact---cattaaacatctacacaaatatttttttgacttagtttgatgaaattagaaaa 43370061  T
Q  354 atggtgcaaatattttattacttaaatgaccaatttataa 393  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  43370062 atggtgcaaatattttacgacttaaatgaccaatttataa 43370101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 42339903 - 42340054
Alignment:
Q  243 gaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatg 342  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||| || |||||||||||||||||||| | ||||  |||||| |||||||||| |    
T  42339903 gaataacacacctatgaactctagttttgagagcaatgaatttggacagacgaacttaacattaaacatccacataaacattttttgtttgagtttgacg 42340002  T
Q  343 aaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  42340003 aaattaggataatggtgcaaatattttatgacataaatgaccaatttgtaac 42340054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 394
Target Start/End: Original strand, 33282710 - 33282997
Alignment:
Q  108 tatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaa 207  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||| | |||||||| | ||| |||||||| ||||||| | |||||    
T  33282710 tatgacatcaaacatgattacttacatacattttcttcttcttgttttgtaatttcaaacataattttacaaataaatattttaccaacaatttcataaa 33282809  T
Q  208 tcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacatta 306  Q
    |||||| || |||||||||| |||  |||||| |   ||||| |||||||||| |  || |||| |||    | ||||| |||  |||||||||||||||    
T  33282810 tcaagtgatagatcaattttttttcaaatcaaaatttaataatacacctatgaaccctaattttaagaatggtgaatttagacctaccaacttaacatta 33282909  T
Q  307 aacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||| |||| | |||| |||||| | |||||||||| ||| || ||||||| ||  ||| |||||| ||||||| ||||||||| ||||    
T  33282910 aacgtccacataaacactttttaactgagtttgattaaaatatgataatgatgtgaatgttttatgacttaaaggaccaatttgtaac 33282997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 389
Target Start/End: Original strand, 36260781 - 36261108
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||  |||||| | |||||||||| ||||||||| || |||| | ||||| ||| |||||  |||||||||||||||||  |  ||||||    
T  36260781 ttcagccaacttctttaaaaattacttatagaccatttaacattgagttggtaggtccaatagtacttatttcatcaaacatgattattactc-acattt 36260879  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaaga 240  Q
    || ||||   ||||||||||| ||| | ||||||||   ||| ||||||  ||||||||||||||||||||||||||||||||||           ||||    
T  36260880 tcatctt---gtttttgaatt-caaacttaattttacggataaatatttcttcaacaatattataaatcaagtaatcgatcaatt-----------aaga 36260964  T
Q  241 cagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttga 340  Q
    | |||||| ||| |||||| || |     ||||||   | |||||||||| ||| |||||||||||||  |||| | |||| |||||| |  ||||||||    
T  36260965 ctgaataatacatctatgaactct-----tgagagtgttgaatttggacatacctacttaacattaaatgtccaaataaacactttttaacagagtttga 36261059  T
Q  341 tgaaattaggataatggtgcaaatattttattacttaaatgaccaattt 389  Q
    ||||| |||||| |||||||| ||||||| | |||||||||| ||||||    
T  36261060 tgaaaataggatcatggtgcatatattttctaacttaaatgatcaattt 36261108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 29491128 - 29490997
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    ||||||| ||| |||| ||||| |||||| ||| ||||||||  ||||| |||||||| |||| ||| | |||||||| | ||| |||||| ||| ||||    
T  29491128 aaaagtggttacgacaccaaacgtgattacttacatacatttgtttcttattgtttttcaatt-caatcttaattttacagataaatatttcatcgacaa 29491030  T
Q  199 tattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||||||||| |||||| ||||||||||||    
T  29491029 tattataaatcaaataatcggtcaattttattt 29490997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 308
Target Start/End: Original strand, 2757339 - 2757513
Alignment:
Q  134 tacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttta-tttg 232  Q
    |||||| ||||||| ||||||||||||| |||||| ||||| ||| ||| || ||| ||||| | |||||||||||| |||| | || ||||||| |||     
T  2757339 tacattctcttctttttgtttttgaatt-caagccaaatttaatagataaatgtttcatcaatagtattataaatcaggtaaacaataaattttatttta 2757437  T
Q  233 aatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaa 308  Q
    ||||||||| |||||| | || || || | |||||||||| |||| | ||||| |||| | |||| ||| ||||||    
T  2757438 aatcaagactgaataatatacttaagaaccttagttttgatagcagtaaatttcgacatatcaacataatattaaa 2757513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 30537621 - 30537507
Alignment:
Q  114 atcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagt 213  Q
    ||||| |||||||| ||||||||||||| || || |||||||  |||| ||| |||||||| | | ||| ||| || |||||||| ||| |||||||| |    
T  30537621 atcaagcatgattacttatatacattttttt-ttattgttttccaatt-caatcctaattt-acaaataaatagttcatcaacaacattgtaaatcaatt 30537525  T
Q  214 aatcgatcaattttattt 231  Q
    ||||||||||||||||||    
T  30537524 aatcgatcaattttattt 30537507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 22224108 - 22224029
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaatttta 176  Q
    |||||||||| ||||||||||||| || |  | ||||  |||||||||||||||||| |||| | ||||||||||||||||    
T  22224108 tccaaaagtgtttatgacatcaaatataacgacttatgcacattttcttcttcttgtatttgca-ttcaagcctaatttta 22224029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 17549819 - 17549728
Alignment:
Q  169 taattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttta-tttgaatcaagacagaataacacacctatga 259  Q
    |||||||| | ||| |||||| |||| ||| ||| |||||||| |||||||||||||||| ||| ||  ||||| |||||| ||||||||||    
T  17549819 taattttacagataaatatttcatcatcaacattgtaaatcaactaatcgatcaattttagtttaaactaagactgaataatacacctatga 17549728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 20524619 - 20524556
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaattt 162  Q
    ||||||| ||||||||   |||||||||| ||| ||||||||||||||| |||||||| |||||    
T  20524619 aaaagtgtttatgacacataacatgattacttacatacattttcttcttattgtttttcaattt 20524556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 22223828 - 22223785
Alignment:
Q  184 atattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||||||||||||  |||||||||||| |||||||||||||||    
T  22223828 atattttatcaacatcattataaatcaaataatcgatcaatttt 22223785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 47731195 - 47731288
Alignment:
Q  296 acttaacattaaacatccatacaaacgctttttgattgagtttgatga-aattaggataatggtgcaaatattttattacttaaatgaccaattt 389  Q
    |||||||||||||| |||||| |||| |||||| ||| |||||||||| || ||  |||||| |||| || |||||| |||||||||| ||||||    
T  47731195 acttaacattaaacgtccatataaacactttttaattaagtttgatgagaaatataataatgatgcagat-ttttatgacttaaatgatcaattt 47731288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 39028708 - 39028757
Alignment:
Q  106 cttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    |||||| ||| ||||||||||| ||||  |||||||||||||||||||||    
T  39028708 cttatggcattaaacatgattacttatgcacattttcttcttcttgtttt 39028757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 48393937 - 48393893
Alignment:
Q  187 ttttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||||    
T  48393937 ttttatcaacaatataataaattaagtgatcgatcaatttaattt 48393893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 41 - 379
Target Start/End: Original strand, 31165617 - 31165956
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||    
T  31165617 ttcatccaacttcgttaaaacgtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttatacacattt 31165716  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttta-tttgaatcaag 239  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||  ||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  31165717 tcttcttcttgtttttgaatttcaagcttaattttacatataaatatttgttcaacaatattataaatcaagtaatcggttaattttattttgaatcaag 31165816  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||  |||||    
T  31165817 atcgaataacacacctatgagctttagttttgagagcaatgaatttggacaaaccaacttaacattaaacatccacataaacactttttgattttgtttg 31165916  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  31165917 atgaaattaagataatggtgcaaatattttatgacttaaa 31165956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 31065296 - 31064937
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||||||||||||| ||| | ||||||||||| | ||||||| ||||||||| |||||||||||||| ||||| ||||||    
T  31065296 ttcagccaacttcgttaaaaagtgcttatagaccatttgaaattaagatggtaggtccaaaaatgcttatgatatcaaacatgattacttatacacattt 31065197  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    | |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||    
T  31065196 ttttcttcttgtttctgaatttcaagcctaattttacatataaatattttatcaacgatattataaatcaagtaatagatcaattttgttttgaatcaag 31065097  T
Q  240 acagaataacacacctatgagctttagttttgagagcaatt-----aatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattga 334  Q
    |  |||||||||||||||||||| ||||||||||||||||      ||||||||||| | ||| |||||||||||||||| | |||| ||||||||||||    
T  31065096 atcgaataacacacctatgagctctagttttgagagcaatataatgaatttggacaaccaaacataacattaaacatccacataaacactttttgattga 31064997  T
Q  335 gtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||| || |||||| ||||    
T  31064996 gtttgatgaaattaggataattgtgcaaatattttacgacttaaaggatcaatttgtaac 31064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 430
Target Start/End: Complemental strand, 15183961 - 15183573
Alignment:
Q  44 agccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttct 143  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||    |||||||||    
T  15183961 agccaacttcgttaaaaagtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttgcgcacattttct 15183862  T
Q  144 tcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagaca 242  Q
    |||| ||||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||||||||| ||||||| |||||||| ||| ||||||||||     
T  15183861 tcttgttgtttttgaatttcaaacctaattttacatataaatatttgatcaacgatattataaatcatgtaatcggtcaattttgttttgaatcaagacc 15183762  T
Q  243 gaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatg 342  Q
    ||||||||||||||| || | |||||||||||||||| ||||| || ||||||||||||||||||| ||| | | |||| |||||||||| |||||||||    
T  15183761 gaataacacacctataagttctagttttgagagcaatgaatttagataaaccaacttaacattaaaaatctacataaacactttttgattaagtttgatg 15183662  T
Q  343 aaattaggataatggtgcaaatattttattactt-aaatgaccaatttataaccnnnnnnnttaaaggactaactttttatattcatgt 430  Q
    |||||| ||||||| || ||||||||||| |||| ||| ||||||||| ||||        ||||||||||||||| ||||| ||||||    
T  15183661 aaattaagataatgatgtaaatattttatgacttaaaaggaccaatttgtaacaaaaaaacttaaaggactaacttgttataatcatgt 15183573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 41 - 394
Target Start/End: Original strand, 27458241 - 27458588
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| |||||| |||||||| ||| |||||  |||||||||| | | |||||||| ||||||||||||||||||||| ||||| ||||||    
T  27458241 ttcagccaacttcgttaaaaaatgcttataaaccatttaaacttaagatggtaggttcaaaagtgtttatgacatcaaacatgattacttatacacattt 27458340  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaag 239  Q
    |||||||||||||||| |||||||| | |||||||| ||||| |||||| |||||||||||||||||||||||||||  ||||||||  |||||||||||    
T  27458341 tcttcttcttgttttttaatttcaaacataattttacatataaatatttgatcaacaatattataaatcaagtaatcagtcaattttgttttgaatcaag 27458440  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || | |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||| | |||| ||||||||||           
T  27458441 actggataacacacctatgagctctagttttaagagcaatgaatttggacaaaccaacttaacattaagcatccacataaacactttttgatt------- 27458533  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||||||||||||||||||| |||||||||| | |||||  | |||||||||||    
T  27458534 atgaaattaggataatggtgctaatattttatgatttaaagaatcaatttataac 27458588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 35307341 - 35306991
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||||| | ||||||||||||||||| | |||||||||| || |||||||||||||||||| ||||| || |||    
T  35307341 ttcagccaacttcgttaaaaagtgtttatagatcatttaacattaagatggtaggtccaaaagtgtttttgacatcaaacatgattacttatacactttt 35307242  T
Q  141 tcttcttcttgtttttgaatttcaagcctaat-tttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaa 238  Q
    | ||  |||||||||| ||||||||| ||| | |||| ||||| | |||| |||||||||||||||||| |  |||| | |||||||| ||| |||||||    
T  35307241 tttt--tcttgttttttaatttcaagtctagtatttacatataaacatttgatcaacaatattataaataagttaattggtcaattttgttttgaatcaa 35307144  T
Q  239 gacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagttt 338  Q
    ||| |||||| ||||||| |||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||| | |||| | || |||||||||||    
T  35307143 gaccgaataatacacctacgagccttagttttgagagcaatgaatttgaacaaaccaacttatcattaaacatccacataaacacattgtgattgagttt 35307044  T
Q  339 gatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttat 391  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  35307043 gatgaaattaggataatgatgcaaatattttatgacataaatgaccaatttat 35306991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 191 - 391
Target Start/End: Complemental strand, 39984938 - 39984737
Alignment:
Q  191 atcaacaatattataaatcaagtaatcgatcaattttatttga-atcaagacagaataacacacctatgagctttagttttgagagcaattaatttggac 289  Q
    |||||||||||||||||||||||||||| |||||||| |||   || ||||| ||||| |||| || ||||||||||||||||| ||||| ||||||||     
T  39984938 atcaacaatattataaatcaagtaatcggtcaattttgtttttcataaagaccgaatagcacatctttgagctttagttttgagggcaatgaatttggat 39984839  T
Q  290 aaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaattt 389  Q
    ||||||||||||||||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  39984838 aaaccaacttaacattaaacatccacataaacattttttgattgagtttgatgaaattaggataatggtgcaaatattttatgacttaaaagaccaattt 39984739  T
Q  390 at 391  Q
    ||    
T  39984738 at 39984737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 191 - 394
Target Start/End: Original strand, 14579172 - 14579374
Alignment:
Q  191 atcaacaatattataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggaca 290  Q
    |||| ||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||  |||||||||| ||| |||||||||||| |||||||| |    
T  14579172 atcatcaatattataaatcaagtaatcggtcaatttttttt-aatcaagacggaataacattcctatgagctctaggtttgagagcaatgaatttggaga 14579270  T
Q  291 aaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaattta 390  Q
    |||||| ||||||||||||||| | | |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||     
T  14579271 aaccaatttaacattaaacatctacataaacactctttgattgagtttgatgaaattaggataatggtgcaaatattttatgacttaaaagaccaatttg 14579370  T
Q  391 taac 394  Q
    ||||    
T  14579371 taac 14579374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 238 - 394
Target Start/End: Original strand, 11581528 - 11581687
Alignment:
Q  238 agacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactta--acattaaacatccatacaaacgctttttgattgag 335  Q
    |||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||  ||||||| |||||| | |||  |||||||||| ||    
T  11581528 agaccgaataacacacatatgagctatagttttgagagcaatgaatttggacaaaccaacttaacacattaagcatccacataaatactttttgattaag 11581627  T
Q  336 tttgatgaaattaggataatggtgcaaatattttattacttaaatg-accaatttataac 394  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||    
T  11581628 tttgatgaaattaggataatgatgcaaatattttatgacttaaaggaaccaatttataac 11581687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 14578442 - 14578586
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    |||||||| |||||||| | ||||||||||||||||| | || ||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  14578442 taaaaagtacttatagatcatttaacattaagatggtaggtctaaaagggcttatgacatcaaacatgattacttatacacatttttttcttcttgtttt 14578541  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaata 200  Q
    | ||||| ||||||||||||| ||||| |||||| |||| |||||    
T  14578542 ttaatttaaagcctaattttacatataaatatttgatcatcaata 14578586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 99 - 394
Target Start/End: Original strand, 26801264 - 26801557
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    ||||||| |||| |||||||| ||||||| ||| | |||| ||||   ||||||||||  | ||||||| |||||||||| ||| | |||| ||||| ||    
T  26801264 aaaagtgtttataacatcaaatatgattacttacacacatattct---tcttgtttttttaattcaagcataattttataaataaacatttcatcaagaa 26801360  T
Q  199 tattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaac 297  Q
    ||||||||||||| ||||||||||||||| |||  ||| ||||  |||||| |||||||| | | ||| |||||||||   |  ||||||| | ||||||    
T  26801361 tattataaatcaaataatcgatcaattttgtttaaaataaagatcgaataaaacacctataaaccttaattttgagagttgtggatttggatataccaac 26801460  T
Q  298 ttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||||||||  || |||| ||||  ||||| | | |  ||||||||| |||||||||| |||||||||||||| ||||| || |||||||||||||    
T  26801461 ttaacattaattattcatataaacattttttaactaaacttgatgaaaataggataatgatgcaaatattttatgacttagataaccaatttataac 26801557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 371
Target Start/End: Original strand, 15939102 - 15939432
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||| ||||| ||| |||| ||||||||| || | |||||||||||| |||| | || ||| ||||||     || |||||||||||  ||   ||||||    
T  15939102 ttcaaccaacttcgttaaatagtgcttatggatcatttaacattaaggtggtagttctaaatgtgctttccttattaaacatgattacctacgcacattt 15939201  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    | ||||||| ||||||||||| ||| |||||||||| ||||| |||||| ||||| | |||||||||||||||  | |||||||||| |||  |||||||    
T  15939202 tattcttctagtttttgaatt-caaccctaattttacatataaatatttcatcaatagtattataaatcaagtgtttgatcaattttgtttcaaatcaag 15939300  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || | |||  |||||||||| |  |||| |||||||| || | |||||||| |||||||||| ||||||| |||| |   || |||||| | || |||||    
T  15939301 actgtatattacacctatgaaccctagtgttgagagcgatgagtttggacataccaacttaagattaaacgtccacatgcacactttttaactgggtttg 15939400  T
Q  340 atgaaattaggataatggtgcaaatattttat 371  Q
    |||||| || |||||||||||| |||||||||    
T  15939401 atgaaaatatgataatggtgcagatattttat 15939432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 11580590 - 11580699
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||  ||| ||||||||||| ||  ||| ||||||||||||||||| | | ||||||||||||||||||| |||||||||| ||||| |||| |    
T  11580590 ttcagccaaattcgttaaaaagtgctcatgaaccatttaacattaagatggtaggttcaaaagtgcttatgacatccaacatgattaattatacacatct 11580689  T
Q  141 tcttcttctt 150  Q
    ||||||||||    
T  11580690 tcttcttctt 11580699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 314
Target Start/End: Complemental strand, 2765696 - 2765463
Alignment:
Q  76 tttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaatttt 175  Q
    ||||||||| || || | ||||||||| ||||||||||||||||||| ||||   ||||    |||||||| |||||| |||||||| | |||||||| |    
T  2765696 tttaacattgaggtgatagatccaaaaatgcttatgacatcaaacattattacacatat----tttcttctacttgttcttgaatttga-gcctaattgt 2765602  T
Q  176 atatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaataacacacctatgagctttagttttgaga 274  Q
      | ||  | |||| ||||||||||||||||||||||||||| |||| ||||  ||| ||||||||| |||||| ||| |||| | | ||||||||||||    
T  2765601 tcacattaaaatttcatcaacaatattataaatcaagtaatcaatcacttttgttttaaatcaagaccgaataa-acatctataaaccttagttttgaga 2765503  T
Q  275 gcaattaatttggacaaaccaacttaacattaaacatcca 314  Q
    ||  | |||||||||  || || ||||||| |||||||||    
T  2765502 gcggtgaatttggacgtacaaagttaacatcaaacatcca 2765463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 4080478 - 4080395
Alignment:
Q  143 ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    |||||||||||||||||||| |||| |||||||| | ||| |||||| || |||||||||| |||||||||||||||||||||||    
T  4080478 ttcttcttgtttttgaattt-aagcataattttacagataaatatttcattaacaatattacaaatcaagtaatcgatcaatttt 4080395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 20710743 - 20710866
Alignment:
Q  268 tttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatatt 367  Q
    ||||||| || | ||||||||| |||||||||| ||||| ||| | | | |||   ||||| ||||||||||||||||  |||||||||||| |||||||    
T  20710743 tttgagaacagtgaatttggaccaaccaacttagcattagacagctacataaatattttttaattgagtttgatgaaaagaggataatggtgaaaatatt 20710842  T
Q  368 ttattacttaaatgaccaatttat 391  Q
    |||| ||||||| |||||||||||    
T  20710843 ttatgacttaaaagaccaatttat 20710866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 48496985 - 48497128
Alignment:
Q  76 tttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaatttt 175  Q
    ||||||||| || |||| | | |||||| |||||||| |||||| | ||||| ||| | | ||||| ||||| ||||||||||||| ||||| |||||||    
T  48496985 tttaacattgaggtggtaggttcaaaagggcttatgatatcaaataggattacttacacaaattttattcttattgtttttgaatt-caagcttaatttt 48497083  T
Q  176 atatatagatattttatcaacaatattataaatcaagtaatcgat 220  Q
    | | ||  |||||||||||||||  ||||||||||| ||||||||    
T  48497084 agagatgaatattttatcaacaactttataaatcaaataatcgat 48497128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 23532929 - 23532831
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    |||| ||||||||||| ||||||| |||| ||| ||||||||||||||| |||||||| ||||| || | |||||||||| ||| |||||| ||||||||    
T  23532929 aaaaatgcttatgacaccaaacataattacttacatacattttcttcttattgtttttcaattt-aatcttaattttatagataaatatttcatcaacaa 23532831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 389
Target Start/End: Original strand, 6568043 - 6568177
Alignment:
Q  255 tatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataa 354  Q
    ||||| || ||||||||  |||||| |||||||||  | ||||||||||||||||||| | | ||||  ||||| |||||||||||||||| |||  ||     
T  6568043 tatgaactctagttttgcaagcaatgaatttggacccatcaacttaacattaaacatctacataaacaatttttaattgagtttgatgaaaatagagtat 6568142  T
Q  355 tggtgcaaatattttattacttaaatgaccaattt 389  Q
    || || ||||||||||| |||||||  ||||||||    
T  6568143 tgttgaaaatattttatgacttaaagtaccaattt 6568177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 30440642 - 30440725
Alignment:
Q  143 ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||| ||||||||||||| ||| ||||||||||||||||  ||||| |||||| |||||||||||||| ||| | |||||||||    
T  30440642 ttctttttgtttttgaatt-caaacctaattttatatataagtatttcatcaacgatattataaatcaaataaactatcaatttt 30440725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 15947498 - 15947672
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    |||| ||||||||| || | |||||||||||| |||| | || ||| ||||||     || ||||||||||| |||   ||||||| |||||||  ||||    
T  15947498 taaacagtgcttatggatcatttaacattaaggtggtaggtctaaacgtgctttccttattaaacatgattacttacgcacattttattcttctaatttt 15947597  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||  ||||||||||||| ||||| |||||| || || | |||||||||||||||  ||||||||||| ||||    
T  15947598 tgaattg-aagcctaattttacatataaatatttcattaatagtattataaatcaagtgttcgatcaatttcattt 15947672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 28292285 - 28292459
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    |||| ||||||||| || | |||||||||||| |||| | || ||| ||||||     || ||||||||||| |||   ||||||| |||||||  ||||    
T  28292285 taaacagtgcttatggatcatttaacattaaggtggtaggtctaaacgtgctttccttattaaacatgattacttacgcacattttattcttctaatttt 28292384  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    ||||||  ||||||||||||| ||||| |||||| || || | |||||||||||||||  ||||||||||| ||||    
T  28292385 tgaattg-aagcctaattttacatataaatatttcattaatagtattataaatcaagtgttcgatcaatttcattt 28292459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 32893849 - 32893687
Alignment:
Q  123 gattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatca 222  Q
    ||||| ||| || |||||||||||| ||||||   |||| ||| | |||||||| | ||| |||||| | |||||| ||||||| ||||||||| |||||    
T  32893849 gattacttacatgcattttcttcttattgtttcccaatt-caatcttaattttacagataaatatttcaacaacaacattataattcaagtaatagatca 32893751  T
Q  223 attttatttgaatc-aagacagaataacacacctatgagctttagttttgagagcaattaattt 285  Q
    ||||||||| || | || |   ||||| |||||||||| | ||||||||||||||||| |||||    
T  32893750 attttatttcaaactaaaatcaaataatacacctatgaaccttagttttgagagcaatgaattt 32893687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21686383 - 21686334
Alignment:
Q  178 atatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  21686383 atatatatattttatcaacaatgttataaattaagtaatcgatcaatttt 21686334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 42242033 - 42241960
Alignment:
Q  186 attttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatga 259  Q
    |||| |||||||||||||||||||||||||||||||||| |  ||| |||||| || |||||||| || |||||    
T  42242033 atttcatcaacaatattataaatcaagtaatcgatcaatctattttaaatcaaaactgaataacaaacatatga 42241960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 15947760 - 15947804
Alignment:
Q  335 gtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||||||| || |||||||||||| ||||||||| |||||||    
T  15947760 gtttgatgaaaatatgataatggtgcagatattttatgacttaaa 15947804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 28292547 - 28292591
Alignment:
Q  335 gtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||||||| || |||||||||||| ||||||||| |||||||    
T  28292547 gtttgatgaaaatatgataatggtgcagatattttatgacttaaa 28292591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 41 - 394
Target Start/End: Original strand, 11175319 - 11175672
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    ||||| |||| ||| |||||| || ||||||||  | ||||||||||||| | | | |||||||||||||||||||||||||||||||||||| |||  |    
T  11175319 ttcagtcaacttcgttaaaaaatgtttatagactatctaacattaagatgataggttcaaaagtgcttatgacatcaaacatgattatttatacacacat 11175418  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    | |||||||| |||||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11175419 t-ttcttcttatttttgaatttcaagcctaattttacttataaatatttgatcaacaatattataaatcaagtaatcggtcaattttattttgaatcaag 11175517  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||    
T  11175518 accgaataacacacctatgagctctagttttgagagcaaagaatttggacaaaccaacttaacattaaacatccacataaacactttttgattaagtttg 11175617  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    || ||||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  11175618 ataaaattaggataatggtgcaaatattttacgacttaaatgaccaatttgtaac 11175672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 394
Target Start/End: Complemental strand, 15175382 - 15175047
Alignment:
Q  57 aaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgttttt 156  Q
    |||||||||||||||| | ||||| ||||||||||| | ||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  15175382 aaaaagtgcttatagatcatttaatattaagatggtaggtccaaaaatgcttatgacatcaaacatgattacttacacacattttcttcttcttgttttt 15175283  T
Q  157 gaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaataacacacct 255  Q
    ||||||||| |||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  15175282 gaatttcaaacctaatattacatataaatatttgatcaacaatattataaatcaagtaatcgatcaattttgttttgaatcaagaccgaataacacacct 15175183  T
Q  256 atgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataat 355  Q
    ||||||| |||||| |||||||   ||||| |||||||||||||||||||||||||||| | ||||  | |||||||||||||||||||||||| |||||    
T  15175182 atgagctctagtttcgagagca---aatttagacaaaccaacttaacattaaacatccacataaacattgtttgattgagtttgatgaaattagaataat 15175086  T
Q  356 ggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||||||||| ||||||| ||| ||||||||||    
T  15175085 ggtgcaaatattttatgacttaaaggacaaatttataac 15175047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 41 - 394
Target Start/End: Original strand, 35170766 - 35171119
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||| ||| ||| ||||| ||| |||| |||| |||||||||||||||||   |||||||| | ||||||||||||| ||||||| ||||| ||||||    
T  35170766 ttcagctaacttcgttaaaatgtgtttatggaccgtttaacattaagatggtaagtccaaaagagtttatgacatcaaagatgattacttatacacattt 35170865  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    |||||||| | |||||||| | |||||||||| ||| | ||| |||||| || ||||||||||||||| |||||||||  ||||||| ||| ||| ||||    
T  35170866 tcttcttcgtatttttgaaat-caagcctaatattagagataaatatttgataaacaatattataaattaagtaatcggccaattttgttttgaaccaag 35170964  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || |||||||||||||||||||  || |||| |||| | | |||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  35170965 accgaataacacacctatgagccctaattttaagagaagtgaatttggacaaatcaacttagcattaaacatctatacaaacactttttgactgagtttg 35171064  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  35171065 atgaaattaggataatggtgcatatattttatgacttaaatgaccaatttgtaac 35171119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 76 - 302
Target Start/End: Complemental strand, 43120875 - 43120648
Alignment:
Q  76 tttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaatttt 175  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  43120875 tttaacattaagatggtaggtccaaaagtgcttatgatatcaaacatgattacttatacacattttcttcttcttgtttttgaatttcaaacctaatttt 43120776  T
Q  176 atatatagatattttatcaacaatattataaatcaagtaatcgatcaatttta-tttgaatcaagacagaataacacacctatgagctttagttttgaga 274  Q
    | ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||| |||| |||||||||||    
T  43120775 acatataaatatttaatcaacaatattataaatcaagtaatcgatcaattttattttgaataaagactgaataacacacatataagctctagttttgaga 43120676  T
Q  275 gcaattaatttggacaaaccaacttaac 302  Q
     |||| |||||| ||||||||| |||||    
T  43120675 acaataaatttgaacaaaccaatttaac 43120648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 69 - 387
Target Start/End: Complemental strand, 31447331 - 31447013
Alignment:
Q  69 tagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcc 168  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| || || |||||||  ||||||| |||||||||| ||||||    
T  31447331 tagaccatttaacattaagatggtagattctaaagtgcttatgacatcaaacatgattacttgtacacattttactcttcttatttttgaatt-caagcc 31447233  T
Q  169 taattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagt 267  Q
    |||||||| | |||  |||||||  |||||||||||| ||||||||||| ||||||||| ||| |||| ||||| |||||||||| ||||| ||  ||||    
T  31447232 taattttacagataattattttaaaaacaatattatagatcaagtaatcaatcaattttgttttgaatgaagaccgaataacacaactatgtgccctagt 31447133  T
Q  268 tttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatatt 367  Q
    |||||||||  | |||||||||||| ||||||||||||||||| ||| |||||| ||||||||  ||||||| | |||||| |||||| |||||||||||    
T  31447132 tttgagagcggtgaatttggacaaatcaacttaacattaaacacccacacaaacactttttgacggagtttggttaaattaagataatagtgcaaatatt 31447033  T
Q  368 ttattacttaaatgaccaat 387  Q
    |||| ||||||| |||||||    
T  31447032 ttatgacttaaaggaccaat 31447013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 26600835 - 26601020
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||| ||  ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||    
T  26600835 ttcagccaacttcgttaaaaagtgtttataaacaatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttatacacattt 26600934  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||||||||||||||||||||||||||||| |||| ||| | |||||| |||||||||||||||||||||||||||| ||||||||    
T  26600935 tcttcttcttgtttttgaatttcaagcctaa-tttacatacaaatatttgatcaacaatattataaatcaagtaatcggtcaatttt 26601020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 394
Target Start/End: Original strand, 1824241 - 1824422
Alignment:
Q  213 taatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacat 311  Q
    |||||| |||||||| ||| |||||| ||| ||||| ||||| |||||||| ||||||| |||||||| |||||| |||||| |||||||||||||||||    
T  1824241 taatcggtcaattttgttttgaatcaggaccgaatagcacacatatgagctctagtttttagagcaatgaatttgaacaaacaaacttaacattaaacat 1824340  T
Q  312 ccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||| | || | | ||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1824341 ccacataa-caccttttgaccgagtttgatgaaattaggataatagtgcaaatattttatgacttaaatgaccaatttataac 1824422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 394
Target Start/End: Original strand, 1858686 - 1858867
Alignment:
Q  213 taatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacat 311  Q
    |||||| |||||||| ||| |||||| ||| ||||| ||||| |||||||| ||||||| |||||||| |||||| |||||| |||||||||||||||||    
T  1858686 taatcggtcaattttgttttgaatcaggaccgaatagcacacatatgagctctagtttttagagcaatgaatttgaacaaacaaacttaacattaaacat 1858785  T
Q  312 ccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||| | || | | ||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1858786 ccacataa-caccttttgaccgagtttgatgaaattaggataatagtgcaaatattttatgacttaaatgaccaatttataac 1858867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 47 - 355
Target Start/End: Complemental strand, 26916403 - 26916095
Alignment:
Q  47 caacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttct 146  Q
    |||| ||| ||||| |||||||| |||| ||||| |||||| |||| | | |||||||| |||||||||||| |||||||| | |   | ||||||||||    
T  26916403 caacttcgttaaaatgtgcttatggaccatttaaaattaaggtggtaggttcaaaagtgtttatgacatcaaccatgattactaacgcatattttcttct 26916304  T
Q  147 tcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaa 245  Q
    |||| ||||||||||| |||  |||||||||| ||| |||||| ||||| | |||||||||||||||||  |||||||||| |||| ||||||||| |||    
T  26916303 tcttatttttgaattt-aagtttaattttataaataaatatttcatcaatagtattataaatcaagtaaatgatcaattttgatttaaatcaagactgaa 26916205  T
Q  246 taacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaa 345  Q
    || ||||| ||||| || ||||||||||||| || |||||| ||| |  || |||  ||||||| | || | |||| |||||| || |||||||||||||    
T  26916204 tatcacacatatgaactatagttttgagagcgatgaatttgaacatatgaatttagtattaaacgttcaaataaacactttttaatcgagtttgatgaaa 26916105  T
Q  346 ttaggataat 355  Q
     ||| |||||    
T  26916104 atagaataat 26916095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 32350815 - 32350933
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  32350815 taaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacatgattacttatacacattttcttcttcttatttt 32350914  T
Q  156 tgaatttcaagcctaatttt 175  Q
    |||| |||||||||| ||||    
T  32350915 tgaa-ttcaagcctattttt 32350933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 32367476 - 32367594
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  32367476 taaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacatgattacttatacacattttcttcttcttatttt 32367575  T
Q  156 tgaatttcaagcctaatttt 175  Q
    |||| |||||||||| ||||    
T  32367576 tgaa-ttcaagcctattttt 32367594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 294 - 379
Target Start/End: Original strand, 9555212 - 9555297
Alignment:
Q  294 caacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  9555212 caacttaacattaaacatccacataaacactttttgattgagtttgatgaaattaggatactggtgcaaatattttatgacttaaa 9555297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 4187325 - 4187449
Alignment:
Q  102 agtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatat 201  Q
    |||| ||||||||||||||||||||| ||| ||||||| ||||||| |||||||  ||||| || ||||| |||||| ||| |||||| ||||||||  |    
T  4187325 agtgtttatgacatcaaacatgattacttacatacattatcttcttattgttttctaattt-aatcctaaatttatagataaatatttcatcaacaacgt 4187423  T
Q  202 tataaatcaagtaatcgatcaatttt 227  Q
    |||||||||||||||| |||||||||    
T  4187424 tataaatcaagtaatcaatcaatttt 4187449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 379
Target Start/End: Complemental strand, 4606382 - 4606082
Alignment:
Q  76 tttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaatttt 175  Q
    ||||||||| || || | |||||||||||  ||||||||||||| || |||  ||||  | ||||| |||||||||||||| || ||||||| |||||||    
T  4606382 tttaacattgaggtgttagatccaaaagtatttatgacatcaaatataattccttatgcatatttttttcttcttgttttttaa-ttcaagcataatttt 4606284  T
Q  176 atatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgaga 274  Q
    | |  ||  ||||| ||||| ||||||| |||| ||||||||  | | |||| |||  ||||||||| |||||| |||| ||||| |  ||||||| |||    
T  4606283 acaggtaagtatttcatcaataatattaaaaattaagtaatcattaatttttctttcaaatcaagaccgaataatacacttatgaaccctagttttaaga 4606184  T
Q  275 gcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattac 374  Q
       || |||||||||| |||||||||||||||||||   | | || |  ||||| |||||||||| ||||| || |||||| |||||| |||||||| ||    
T  4606183 tggatgaatttggacataccaacttaacattaaaca---acataaccattttttaattgagtttggtgaaaataagataattgtgcaagtattttatgac 4606087  T
Q  375 ttaaa 379  Q
    |||||    
T  4606086 ttaaa 4606082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 45537752 - 45537952
Alignment:
Q  178 atatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatgagctttagttttgagagca 277  Q
    ||||| |||||| ||  ||||||||||| || || || |||||||||||| ||  ||||||||  |||||| |||||||||| | ||||||||||||||     
T  45537752 atataaatatttgattgacaatattatagattaaatattcgatcaatttttttcaaatcaagaatgaataatacacctatgaaccttagttttgagagcg 45537851  T
Q  278 attaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattactta 377  Q
    || |||||||||  ||||| ||||||||||| ||||| | |||   ||||| |  ||||||||||||| || |||||| ||||| | ||||||| |||||    
T  45537852 atgaatttggacctaccaatttaacattaaa-atccacataaatattttttaaccgagtttgatgaaaatatgataatagtgcagagattttatgactta 45537950  T
Q  378 aa 379  Q
    ||    
T  45537951 aa 45537952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 1823403 - 1823551
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||||||||| ||| |||||||||| |||||| | |||||| |||||| |||||||||||| |||||  |||| |||||   ||||| |||||||    
T  1823403 taaaaagtgcttataaaccatttaacattacgatggtaggtccaaatgtgcttgtgacatcaaacaagattacctatacacatt---ttctttttgtttt 1823499  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaa 207  Q
    || |  | |||| ||||||||  |||| |||||| || ||||||||||||||    
T  1823500 tgtacatgaagcttaattttacctataaatatttgattaacaatattataaa 1823551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 1857848 - 1857996
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||||||||| ||| |||||||||| |||||| | |||||| |||||| |||||||||||| |||||  |||| |||||   ||||| |||||||    
T  1857848 taaaaagtgcttataaaccatttaacattacgatggtaggtccaaatgtgcttgtgacatcaaacaagattacctatacacatt---ttctttttgtttt 1857944  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaa 207  Q
    || |  | |||| ||||||||  |||| |||||| || ||||||||||||||    
T  1857945 tgtacatgaagcttaattttacctataaatatttgattaacaatattataaa 1857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 14636679 - 14636794
Alignment:
Q  97 ccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaac 196  Q
    |||||| | |||||||||||||||||||||| ||| || ||||   ||||||||||||||||| ||||||| |||||||| | ||| |||||| |||| |    
T  14636679 ccaaaaatacttatgacatcaaacatgattagttacatgcatt---ttcttcttgtttttgaa-ttcaagcttaattttacaaataaatatttcatcagc 14636774  T
Q  197 aatattataaatcaagtaat 216  Q
    ||||||||||||||| ||||    
T  14636775 aatattataaatcaattaat 14636794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 10839657 - 10839763
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    ||||||||||  ||| ||||||||||||||||  ||   ||||||||||||||||||||||||| ||||||  | |||||| ||||| |||||| |||||    
T  10839657 tccaaaagtgtctattacatcaaacatgattacctacgcacattttcttcttcttgtttttgaa-ttcaagtttgattttacatataaatatttcatcaa 10839755  T
Q  196 caatatta 203  Q
    ||||||||    
T  10839756 caatatta 10839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 10839910 - 10840079
Alignment:
Q  202 tataaatcaagtaatcgatcaattttatttgaa-tcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactta 300  Q
    ||||||||||||||||  |||||||| ||| || ||||||  |||||| |||||||| |  | |||||||||| ||| | |||||||||| | |||||||    
T  10839910 tataaatcaagtaatcattcaattttgtttcaaatcaagagtgaataatacacctataaattctagttttgagtgcagtgaatttggacatatcaactta 10840009  T
Q  301 acattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttat 371  Q
    |||| |||| |||| | |||| | |||| |  ||||||||||||| || |||||||||||| ||| |||||    
T  10840010 acataaaacgtccacataaacac-ttttaaccgagtttgatgaaaataagataatggtgcatatactttat 10840079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 16816200 - 16816302
Alignment:
Q  292 accaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttat 391  Q
    |||||||||||||||||  |||| | |||   ||||| || ||||||||||||||||| |||||| || | ||||||||| ||||||| |||||||||||    
T  16816200 accaacttaacattaaatgtccacataaatattttttaatcgagtttgatgaaattagaataatgatgtagatattttatgacttaaaggaccaatttat 16816299  T
Q  392 aac 394  Q
    |||    
T  16816300 aac 16816302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 361
Target Start/End: Original strand, 40112689 - 40112892
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaagacagaataacacacctatgag 260  Q
    ||||||||||||||| |  ||| |||||| ||| ||||||||||||||||||||||| ||||||||    | || ||| ||  ||||||||||  || |     
T  40112689 ttcaagcctaatttttttgataaatatttcatcgacaatattataaatcaagtaatcaatcaatttgtcgtaaaacaaaaccaaataacacacacataac 40112788  T
Q  261 ctttagttttgagagcaattaatttggacaaaccaactt---aacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatgg 357  Q
    |  |||||||||||    | ||||| |||  | ||||||   |||||||||||| |||| |||| |||||| |||||||||||||||| || ||||||||    
T  40112789 ccctagttttgagaatggtgaatttagacttaacaacttaacaacattaaacattcatataaacactttttaattgagtttgatgaaaataagataatgg 40112888  T
Q  358 tgca 361  Q
    ||||    
T  40112889 tgca 40112892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 26601064 - 26601115
Alignment:
Q  316 acaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatatt 367  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  26601064 acaaacactttttgattgagtttgataaaattaagataatggtgcaaatatt 26601115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 12076565 - 12076692
Alignment:
Q  188 tttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttg 286  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||  ||||||   | |||||||||| ||||| |  |||||||||||| | | ||||      
T  12076565 tttatcaacaatattataattcaagtaatcaatcacttttatttcaaatcaaagtaaaataacacacatatgaaccctagttttgagagaagtgaattcc 12076664  T
Q  287 gacaaaccaacttaacattaaacatcca 314  Q
     ||| |||||||||| ||||||| ||||    
T  12076665 aacataccaacttaaaattaaacgtcca 12076692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 37295065 - 37294978
Alignment:
Q  202 tataaatcaagtaatcgatcaatttta-tttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttgga 288  Q
    |||||||||||||||| |||||||||| ||| ||||||||| |||||| |||| ||||| |  || ||||||||||  ||||||||||    
T  37295065 tataaatcaagtaatcaatcaattttattttaaatcaagactgaataagacacttatgaaccctatttttgagagcggttaatttgga 37294978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 9550716 - 9550609
Alignment:
Q  107 ttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataa 206  Q
    |||||||| ||||||| |||| || |||||||||||||||| |||||| | || ||||| |||||||||| | ||| ||||||| | ||||| ||||| |    
T  9550716 ttatgacaccaaacataattacttttatacattttcttctt-ttgtttgttaa-ttcaatcctaattttagagataaatattttgttaacaacattat-a 9550620  T
Q  207 atcaagtaatc 217  Q
    |||||||||||    
T  9550619 atcaagtaatc 9550609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 14628946 - 14629018
Alignment:
Q  159 atttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    |||| |||| |||||||| | ||| |||||| ||||||||||||||||||||| ||||  ||||||| |||||    
T  14628946 attttaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctattt 14629018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 43915680 - 43915738
Alignment:
Q  336 tttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||| ||| ||||||||| | ||||||||| |||||||  |||||||||||||    
T  43915680 tttgatgaaaatagaataatggtgtagatattttatgacttaaagaaccaatttataac 43915738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 8149813 - 8149893
Alignment:
Q  146 ttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    |||||||||||||||| ||| ||||| |||||||||| |||||| ||||| |  | ||||||| | |||| |||||||||||    
T  8149813 ttcttgtttttgaatt-caaacctaactttatatataaatatttcatcaaaagcactataaattatgtaaacgatcaatttt 8149893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 28452044 - 28452097
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagta 214  Q
    ||||| |||||||||| | ||| |||||| || |||||||||||||||||||||    
T  28452044 ttcaatcctaattttaaagataaatatttcattaacaatattataaatcaagta 28452097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 5188094 - 5187740
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||||||| | ||||||||||||| | | |||||||||| ||||||||||||||||||||||||||| ||||||    
T  5188094 ttcagccaacttcgttaaaaagtgtttatagaccatgtaacattaagatgttaggtccaaaagtgtttatgacatcaaacatgattatttatacacattt 5187995  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaag 239  Q
    |||| ||||||||||| |||||||| |||||||||| ||||| |||||| || ||||||||||||||| ||||||| | | ||||||  |||||||||||    
T  5187994 tcttgttcttgtttttaaatttcaaacctaattttacatataaatatttgatgaacaatattataaattaagtaattggtaaattttgttttgaatcaag 5187895  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || |||||||||||| ||||||| ||||||||| |  ||| ||||||||| ||||||||||||||||||||| || | |||| |||||||||||||||||    
T  5187894 accgaataacacacccatgagctctagttttgaaaataatgaatttggaccaaccaacttaacattaaacattcacataaacactttttgattgagtttg 5187795  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||| ||||||||||||||||||||| | ||||| ||||||||| ||||    
T  5187794 atgaaattagaataatggtgcaaatattttatgatttaaaggaccaatttgtaac 5187740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 9298953 - 9298600
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||  | ||||||||||| | | | ||||||||||  ||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  9298953 ttcagccaacttcattgaaaagtgcttacaaatcatttaacattacaatggtagatccaaaagtgcttatgacatcaatcatgattacttatacacattt 9298854  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaag 239  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| |||||| ||||||||||||||||||||| |||||| ||||||||  |||||||||||    
T  9298853 tcttcttcttgtttttgtatttcaagcttaattttacatataaatatttgatcaacaatattataaatcaaataatcggtcaattttgttttgaatcaag 9298754  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || ||||||||| |||||||||| ||||||  |||||||| |||||||||| || |||||||||||||||||||| | |||  |||||||| ||| ||||    
T  9298753 actgaataacactcctatgagctctagtttatagagcaatgaatttggacagacaaacttaacattaaacatccacataaatactttttgactgaatttg 9298654  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||    
T  9298653 atgaaattaggataatagtgcaaatattttatgacttaaa-gaccaatttgtaac 9298600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 41 - 379
Target Start/End: Original strand, 10221498 - 10221838
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| |||||  |||||||||||| ||||||||||||||||| | |  |||| ||||||||| |||||||||||||| ||||| ||||||    
T  10221498 ttcagccaacttcgttaaaacatgcttatagaccatttaacattaagatggtaggttaaaaaatgcttatgatatcaaacatgattacttatacacattt 10221597  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaag 239  Q
    |||||||||| ||||||||||||||||||||||  | ||||| |||||| ||||||||||||||||||||| ||||   ||||||||  ||||||||       
T  10221598 tcttcttcttatttttgaatttcaagcctaattgaacatataaatatttgatcaacaatattataaatcaaataattagtcaattttgttttgaatc--- 10221694  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgat----tgag 335  Q
    || ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| | |||| ||    |  |    
T  10221695 accgaataacacacatatgagctatagttttgagagcaatgaatttggacaaaccaacttaacattaaacatccacataaacaccttttaattatgtatg 10221794  T
Q  336 tttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  10221795 tttgatgaaattaggataatcgtgcaaatattttatgacttaaa 10221838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 56 - 394
Target Start/End: Complemental strand, 18704888 - 18704550
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||| |||| || | ||||| ||||||||||| | ||||||||||||||||||| ||||||| |||| ||||  | || || ||||||||| |||    
T  18704888 taaaaagtgtttatggatcatttaatattaagatggtaggtccaaaagtgcttatgacaacaaacataattacttatgcatatatttttcttcttgcttt 18704789  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacc 254  Q
    |||||| |||||||||||||| | ||| ||||||||||||||||||||||||| || |||||| |||||||| ||| |||||||||   |||||||||||    
T  18704788 tgaatt-caagcctaattttacagataaatattttatcaacaatattataaattaaataatcggtcaattttgttttgaatcaagatcaaataacacacc 18704690  T
Q  255 tatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataa 354  Q
    ||||| |  ||||||||||||| || |||| ||||||| |||||||||||||| |||||| ||| || ||||||||  ||||||||||||||| ||||||    
T  18704689 tatgaaccatagttttgagagcgatgaattaggacaaatcaacttaacattaagcatccacacatacactttttgaccgagtttgatgaaattgggataa 18704590  T
Q  355 tggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||| ||||||||||| ||||||||||||||||| ||||    
T  18704589 tggtgaaaatattttatgacttaaatgaccaatttgtaac 18704550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 56 - 394
Target Start/End: Complemental strand, 21437221 - 21436885
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    ||||||||||||||||| | ||||||||||||||||| | | |||||||  | ||||||||||||||||||| ||||| | |||||  ||||||| ||||    
T  21437221 taaaaagtgcttatagagcatttaacattaagatggtaggttcaaaagtattgatgacatcaaacatgattacttatacatatttt--tcttcttatttt 21437124  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacc 254  Q
    |||||| ||| |||||||||| | ||| |||||| |||||||| ||||||||||||||||||| |||||||| ||| ||||||| |  ||||||||||      
T  21437123 tgaattccaa-cctaattttacagataaatatttgatcaacaacattataaatcaagtaatcggtcaattttgttttgaatcaaaatcgaataacacatt 21437025  T
Q  255 tatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataa 354  Q
    ||||| |  ||||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||    
T  21437024 tatgatcactagttttgacagcagtgaatttggacaaatcaacttaacattaaacatccacacaaacactttttgacttagtttgatgaaattaggataa 21436925  T
Q  355 tggtgcaaatattttattacttaaatgaccaatttataac 394  Q
     ||||||| |||||||| ||||||| ||||||||| ||||    
T  21436924 cggtgcaattattttatgacttaaaggaccaatttgtaac 21436885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 43081044 - 43080828
Alignment:
Q  58 aaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttg 157  Q
    ||||||||||||||||| |||||||||||||||||   | |||||||| |||||||||||||||||| || ||||| |||||||||| ||     |||      
T  43081044 aaaagtgcttatagaccatttaacattaagatggtaagttcaaaagtgtttatgacatcaaacatgagtacttatacacattttcttatt----atttat 43080949  T
Q  158 aatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaataacacaccta 256  Q
    || |||||||||||||||||| ||| |||||| |||||||| ||||||||||| |||| |  | ||||||  ||| |||||||||  ||||||||||||     
T  43080948 aaattcaagcctaattttatagataaatatttgatcaacaagattataaatcatgtaaactgtgaattttgttttaaatcaagaccaaataacacacctt 43080849  T
Q  257 tgagctttagttttgagagca 277  Q
    |||    ||||||||||||||    
T  43080848 tgaatcatagttttgagagca 43080828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 96 - 307
Target Start/End: Original strand, 37817597 - 37817809
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacatttt-cttcttcttgtttttgaatttcaagcctaattttatatatagatattttatca 194  Q
    ||||||||||||||||||||||||||  |||| ||| | ||||||| |||||||  |||||| |||| |||||||||||||| ||||| |||||||||||    
T  37817597 tccaaaagtgcttatgacatcaaacaaaattacttaaacacatttttcttcttcaagttttttaatt-caagcctaattttacatataaatattttatca 37817695  T
Q  195 acaatattataaatcaagtaatcgatcaattttat-ttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaac 293  Q
    |||||| |||||| |||||||| ||||||  || | |  ||||||||  |||||| |||| ||||| |  |||||||||||||  | |||||||||| |     
T  37817696 acaatactataaagcaagtaatagatcaacattgtgtcaaatcaagattgaataatacacttatgaaccatagttttgagagcggtgaatttggacatat 37817795  T
Q  294 caacttaacattaa 307  Q
     |||||||||||||    
T  37817796 taacttaacattaa 37817809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 83555 - 83723
Alignment:
Q  56 taaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttt 155  Q
    |||||| || |||| |||| ||||||||| || |||| | |||||||||| ||||| ||||||||||||||  ||||  |||||||||||||| |||| |    
T  83555 taaaaaatgtttatcgaccatttaacattgaggtggtaggtccaaaagtgtttatgtcatcaaacatgattgcttatgcacattttcttcttcatgttat 83654  T
Q  156 tgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    |||| |||||| ||||||||| | ||| || ||| |||||||| |||||||||  |||||||||||||||||    
T  83655 tgaa-ttcaagtctaattttacagataaatttttcatcaacaacattataaat--agtaatcgatcaatttt 83723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 305
Target Start/End: Original strand, 33428814 - 33429019
Alignment:
Q  98 caaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaaca 197  Q
    |||||||| ||||||||||||| ||||||| |||  | | |||| |||||||| |||||||||| ||||| ||||||||    || ||||||||||||||    
T  33428814 caaaagtgtttatgacatcaaatatgattacttacttgcctttt-ttcttcttctttttgaatt-caagcttaattttacggttaaatattttatcaaca 33428911  T
Q  198 atattataaatcaagtaatcgatcaatttt-atttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaa 296  Q
    |||||||||||||| ||||||||| |||||  ||| ||||||||| ||||||  ||| |||||  | ||||||||||||| || ||||| |||| | |||    
T  33428912 atattataaatcaaataatcgatcgattttgttttaaatcaagactgaataatgcacatatga-atctagttttgagagcgataaatttagacatatcaa 33429010  T
Q  297 cttaacatt 305  Q
    |||||||||    
T  33429011 cttaacatt 33429019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 1130937 - 1130598
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||| ||| | || |||| ||||||||| |  ||||   |||||||||||||||||||| ||||||||||  |||   |||||     
T  1130937 ttcagccaacttcgttaaaaggtgttcatggaccatttaacattgaagtggtaagtccaaaagtgcttatgacataaaacatgatttcttacgcacatt- 1130839  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagata-ttttatcaacaatattataaatcaagtaatcgatcaattttatttgaatcaag 239  Q
      || |||||||||||||| |||||||||||||||| | ||| ||| ||||||||| |  |||||||||||||||||| ||||||||| ||    ||||     
T  1130838 --ttgttcttgtttttgaa-ttcaagcctaattttacagataaatatttttatcaaaagcattataaatcaagtaatcaatcaattttgtt----tcaaa 1130746  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
     ||    || |||||||||| | |  |||||||||    | ||||| |||  |||||| ||||||||||| |||| | |||| |||||| | ||||||||    
T  1130745 tca----aatacacctatgaacct--gttttgagaatggtgaatttagacctaccaacctaacattaaac-tccacataaacactttttaactgagtttg 1130653  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    || ||| |||||||||| |||| ||||||||| ||||||| ||||||||| ||||    
T  1130652 attaaaataggataatgatgcagatattttatgacttaaaagaccaatttgtaac 1130598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 361
Target Start/End: Original strand, 17200687 - 17200882
Alignment:
Q  167 cctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagcttta 265  Q
    ||||||||||   ||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| ||  |||||||||  | ||    
T  17200687 cctaattttaaggataaatatttcatcaacaatattataaatcaagtgatcgatcaattttatttcgaatcaagagtgaacaatgcacctatgaagtcta 17200786  T
Q  266 gttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgca 361  Q
    ||||||||||| || ||||||   | |||||||||||||| ||| || |   ||||  ||||| ||| ||||||| |||| |||||| ||||||||    
T  17200787 gttttgagagcgatgaatttgtgtataccaacttaacattcaacgtctacgtaaacattttttaattaagtttgaggaaaataggattatggtgca 17200882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 11862316 - 11862382
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||| ||||| |||| | ||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  11862316 ttcaatcctaactttacagataaatatttcatcaacaaaattataaatcaagtaatcgatcaatttt 11862382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 14201583 - 14201473
Alignment:
Q  167 cctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagcttta 265  Q
    ||||||||||   ||| ||||||||||||||| |||||||||||||||||| ||||||||| |||  || |||||| |||||| |||| |||||    ||    
T  14201583 cctaattttaataataaatattttatcaacaacattataaatcaagtaatcaatcaattttgtttcaaaccaagaccgaataatacacttatgaatcata 14201484  T
Q  266 gttttgagagc 276  Q
    |||||||||||    
T  14201483 gttttgagagc 14201473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 35347358 - 35347227
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatac----attttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatca 194  Q
    |||| |||||||||||||||||||||||| |||  |||    |||||| | |||||||||||||||| ||||||||| |||| | ||| |||||| || |    
T  35347358 aaaaatgcttatgacatcaaacatgattacttaattaccaacattttcattttcttgtttttgaatt-caagcctaaatttaaagataaatatttcatta 35347260  T
Q  195 acaatattataaatcaagtaatcgatcaatttt 227  Q
     |||| ||||||||| || |||| |||| ||||    
T  35347259 gcaatgttataaatcgagcaatctatcattttt 35347227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 45707355 - 45707221
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    |||||||||  | ||||||  ||||||||| | ||| | | |||||||||||| ||||||  |||| ||||| |||||||| | ||| |||||| ||| |    
T  45707355 tccaaaagtaatcatgacactaaacatgataacttacacatattttcttcttcgtgttttcaaatt-caagcttaattttagaaataaatatttcatcca 45707257  T
Q  196 caatattataaatcaagtaatcgatcaattttattt 231  Q
    |||| ||||||||||  ||||| |||||||||||||    
T  45707256 caattttataaatcagttaatcaatcaattttattt 45707221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 36472491 - 36472374
Alignment:
Q  94 gatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttctt-gtttttgaatttcaagcctaattttatatatagatattttat 192  Q
    |||| ||||||| |||||||||||||| | |||| ||| |  |||||||||||| || ||||||||||| ||||||||| |||| |  || |||||| ||    
T  36472491 gatctaaaagtgtttatgacatcaaacctaattacttaca--cattttcttcttttttgtttttgaatt-caagcctaaatttacaggtaaatatttcat 36472395  T
Q  193 caacaatattataaatcaagt 213  Q
    ||| ||||| |||||||||||    
T  36472394 caagaatataataaatcaagt 36472374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 931209 - 931122
Alignment:
Q  292 accaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||||||||||||||  ||| | |||| | |||| | | |||||||||||| || ||||||| |||| ||||||||| |||||||    
T  931209 accaacttaacattaaacggccacataaacaccttttaactaagtttgatgaaagtatgataatgatgcatatattttatgacttaaa 931122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 41959698 - 41959848
Alignment:
Q  76 tttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaatttt 175  Q
    ||||||||| ||||||| | |  |||| ||| ||||| |||||| ||||||| | |   |||||||| |||||||||||||||| ||||| ||||| |||    
T  41959698 tttaacattgagatggtaggttgaaaaatgcatatgatatcaaatatgattactcactcacattttcctcttcttgtttttgaa-ttcaaacctaagttt 41959796  T
Q  176 atatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    | | ||| |||||  | ||| ||||| |||||| || |||||||||| ||||    
T  41959797 acagataaatattccagcaataatatcataaataaaataatcgatcagtttt 41959848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 41959855 - 41959947
Alignment:
Q  281 aatttggacaaaccaacttaacattaaacatccatacaaacgcttt----ttgattgagtttgatgaaattaggataatggtgcaaatatttt 369  Q
    ||||| |||| || |||||||||||||||||| | || ||| ||||    || |||||||||||| ||| |||||| ||||||||||||||||    
T  41959855 aatttcgacatactaacttaacattaaacatctacacgaacactttttaattaattgagtttgataaaaataggatcatggtgcaaatatttt 41959947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 7817069 - 7816961
Alignment:
Q  199 tattataaatcaagtaatcgatcaatttta-tttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaac 297  Q
    |||||||||| ||||| ||||||||||||| ||| ||||||||| |||||| |||  ||||| || || |||| | | |||| ||||| |||| || |||    
T  7817069 tattataaattaagtagtcgatcaattttattttaaatcaagactgaataatacatatatgaactcta-ttttaacaacaatgaatttagacatactaac 7816971  T
Q  298 ttaacattaa 307  Q
    ||||||||||    
T  7816970 ttaacattaa 7816961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 9158820 - 9158759
Alignment:
Q  164 aagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatt 225  Q
    |||| |||||||||| ||| |||||| ||||||||||||| |||||||  ||| ||||||||    
T  9158820 aagcataattttataaataaatatttcatcaacaatattacaaatcaataaattgatcaatt 9158759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 35494143 - 35494086
Alignment:
Q  170 aattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||||||| ||| |||||| |||| |||| ||||||||||||| || ||||||||||    
T  35494143 aattttatagataaatatttcatcagcaattttataaatcaagtcattgatcaatttt 35494086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 43229275 - 43229361
Alignment:
Q  143 ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatat---tataaatcaagtaatcgatcaatttt 227  Q
    |||||||||||||||||||| || | |||||||| | ||| ||||||||| ||||||||   ||||||||||||| | ||||| ||||    
T  43229275 ttcttcttgtttttgaattt-aaacttaattttacaaataaatattttattaacaatatttgtataaatcaagtatttgatcagtttt 43229361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 35341911 - 35341851
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaa 159  Q
    |||| |||||||||||||||||||||||| ||||  | |||||| | || |||||||||||    
T  35341911 aaaaatgcttatgacatcaaacatgattacttatccatattttcatgttattgtttttgaa 35341851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 391
Target Start/End: Original strand, 11751788 - 11752136
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||| ||||| ||||| | ||||    
T  11751788 ttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatcaaacacgattacttatacaaattt 11751887  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    | || ||||||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||| |||||||||||| | |||||||| ||| ||||||||    
T  11751888 tttt-ttcttgttttttaatttcaagtttaattttacatataaacatttgatcaacaatattacaaatcaagtaattggtcaattttgttttgaatcaag 11751986  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || |||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| | || | | |||||||||||||||    
T  11751987 ac-gaataacacacctacgagccttagttttgatagcaataaatttggacaaaccaacttaacattaaacatccacataa-cacattttgattgagtttg 11752084  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttat 391  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11752085 atgaaattaggataatggtgcaaatattttatgacataaatgaccaatttat 11752136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 99 - 394
Target Start/End: Original strand, 2391390 - 2391685
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||| || ||||||||||||||||| |||||||||| ||||| |||||  ||||||||    
T  2391390 aaaagtgcttatgacatcaaatatgattacttatacacattttcttgtttttgtttttgaatttcaaacctaattttacatataaatatta-atcaacaa 2391488  T
Q  199 tattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaac 297  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||| |||| |||||||||||||||| |||||||||||||||||    
T  2391489 tattataaatcaagtaatcgatcaattttgttttgaatcaagaccgaataacacacttataagctctagttttgagagcaatgaatttggacaaaccaac 2391588  T
Q  298 ttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    ||||||||||| ||||| | |||  |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| ||||    
T  2391589 ttaacattaaatatccacataaatactttttgattgagtttgatgaaattagggtaatggtgcaaatattttatgacttaaaggatcaatttgtaac 2391685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 121 - 394
Target Start/End: Original strand, 11785667 - 11785938
Alignment:
Q  121 atgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgat 220  Q
    ||||||| ||||| ||||||| || |||||||||||||||||||| |||||||||| ||| | |||||  |||||||||||||||||  ||||||||  |    
T  11785667 atgattacttatacacattttattgttcttgtttttgaatttcaaacctaattttacatagaaatattg-atcaacaatattataaa--aagtaatctgt 11785763  T
Q  221 caattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaa 319  Q
    ||||||| ||| |||||||||| ||||||||   ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||    
T  11785764 caattttgttttgaatcaagactgaataacatgtctatgagttttagttttgagagcaatgaatttggacaaaccaacttaacattaaacatccacataa 11785863  T
Q  320 acgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  11785864 acactttttgattgagtgtgatgaaattaggataatggtgcaaatattttatgacttaaaggatcaatttataac 11785938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 41 - 389
Target Start/End: Complemental strand, 10479854 - 10479507
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||||||||| || ||| ||||||||||| || | || |||||||  |||||||||||||||||||  || ||| |||||    
T  10479854 ttcagccaacttcgttaaaaagtgcttataaacattt-aacattaagatagtaggtctaaaagtgtctatgacatcaaacatgattgcttgtatccattt 10479756  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    |||||||||| ||| |||||| |||||||||||||| | ||| |||||| || || || |||||||||||||||||||||||||||| ||| ||||||||    
T  10479755 tcttcttcttatttatgaatt-caagcctaattttacaaataaatatttgattaaaaacattataaatcaagtaatcgatcaattttgttttgaatcaag 10479657  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgc-tttttgattgagttt 338  Q
    || ||||||||||||| |||||  ||||||| |||| | | ||||||||||| | |||||||||||||||||||| ||||||   ||||||| |||||||    
T  10479656 accgaataacacacctttgagccatagttttaagagtagtgaatttggacaatc-aacttaacattaaacatccacacaaacatgtttttgactgagttt 10479558  T
Q  339 gatgaaattaggataatggtgcaaatattttattacttaaatgaccaattt 389  Q
    |||||||||||||||| ||| |||||||||||||| ||||| |||||||||    
T  10479557 gatgaaattaggataaaggtacaaatattttattatttaaaagaccaattt 10479507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 393
Target Start/End: Original strand, 10629020 - 10629148
Alignment:
Q  264 tagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaa 363  Q
    ||||||||||| |||| |||||||||| | |||||||| ||| |||||| | | ||||  ||||| || ||||||| ||||| ||| |||||| ||||||    
T  10629020 tagttttgagaacaatgaatttggacatatcaacttaatattgaacatcaacataaactttttttaatcgagtttggtgaaaatagaataatgatgcaaa 10629119  T
Q  364 tattttattacttaaatgaccaatttataa 393  Q
    || ||||| ||||||||| |||||||||||    
T  10629120 ta-tttatgacttaaatggccaatttataa 10629148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 34595909 - 34596241
Alignment:
Q  57 aaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgttttt 156  Q
    ||||| || ||||||||| ||||||||||||||||| | |||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||| |||||    
T  34595909 aaaaaatgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatcaaatatgattacttatacacattttcttcttcttattttt 34596008  T
Q  157 gaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacct 255  Q
    ||||| ||||| |||||||| | ||| |||||| |||||||| ||||||||||||||||||  |||||||||||| |||||||||  |||||||||||||    
T  34596009 gaatt-caagcttaattttaaagataaatatttgatcaacaacattataaatcaagtaatccgtcaattttattttgaatcaagatcgaataacacacct 34596107  T
Q  256 atgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataat 355  Q
    | |  |  |||||||||||||| | |||||||||||| ||||||||||||||||||||| |||||| |||||||| | |||| ||||||| |||||||||    
T  34596108 acggacactagttttgagagcagtgaatttggacaaatcaacttaacattaaacatccacacaaacactttttgacttagttcgatgaaactaggataat 34596207  T
Q  356 ggtgcaaatattttattacttaaatgaccaattt 389  Q
     ||||||||||||||| |||||||||||||||||    
T  34596208 agtgcaaatattttatgacttaaatgaccaattt 34596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 220 - 379
Target Start/End: Original strand, 29407998 - 29408158
Alignment:
Q  220 tcaatttt-atttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccataca 318  Q
    |||||||| |||||||||||||| |||||| ||| |||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |    
T  29407998 tcaattttgatttgaatcaagaccgaataatacatctatgaactctagttttgagaacaatgaatttggacaaaccaacttaacattaaacatccatata 29408097  T
Q  319 aacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  29408098 aacactttttgattgagtttgatgaaattagaataatagtgcaaatattttatgacttaaa 29408158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 47085121 - 47084935
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| || || | | ||||||||||||||||| | | ||||| || |||| ||||||||||||  || ||||  ||||||    
T  47085121 ttcagccaacttcgttaaaaagtgtttgtaaatcatttaacattaagatggtaggttcaaaaatgtttattacatcaaacatggatacttatgcacattt 47085022  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  47085021 tcttcttcttgtttttgaatttcaggcctagttttacatataaatatttgatcaacaatattataaatcaagtaatcggtcaatttt 47084935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 394
Target Start/End: Complemental strand, 47084909 - 47084740
Alignment:
Q  224 ttttatttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaa-cattaaacatccatacaaacg 322  Q
    |||| ||| |||||| || ||||||||||||||||| || ||| ||||| | |||| ||||| ||||||||||||||| ||||||||||||| | ||||     
T  47084909 tttttttttaatcaataccgaataacacacctatgaactctagatttgacatcaatgaattttgacaaaccaacttaaacattaaacatccacataaaca 47084810  T
Q  323 ctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||  | ||||||| ||||||||| ||||    
T  47084809 ctttttgattaagtttgttgaaattaggataatggtgcaaatattt--tgacttaaaggaccaatttgtaac 47084740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 38582366 - 38582236
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    ||||||| || |||||||||| |||||||||| ||| | |||||||||| |||||||||||||||| |||||||||||||| | ||| ||||||||| ||    
T  38582366 tccaaaaatgtttatgacatctaacatgattacttagacacattttctttttcttgtttttgaatt-caagcctaattttaaagataaatattttataaa 38582268  T
Q  196 caatattataaatcaagtaatcgatcaatttt 227  Q
    ||||||||||||| |||||||||||| |||||    
T  38582267 caatattataaattaagtaatcgatcgatttt 38582236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 39983634 - 39983558
Alignment:
Q  290 aaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatat 366  Q
    ||||||||||||||||||||||||| | |||| |||||||||||| | |||||||||||||||||||||||| ||||    
T  39983634 aaaccaacttaacattaaacatccacataaacactttttgattgaatctgatgaaattaggataatggtgcatatat 39983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 108 - 311
Target Start/End: Complemental strand, 32438267 - 32438064
Alignment:
Q  108 tatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaa 207  Q
    ||||||||||||||| |||| | | | |||||||| |||| ||||||||||| |||||| ||||||||| | ||| |||||| || ||| |   ||||||    
T  32438267 tatgacatcaaacattattactcacacacattttcatcttgttgtttttgaa-ttcaagtctaattttacagataaatatttcattaactacggtataaa 32438169  T
Q  208 tcaagtaatcgatcaattttatttgaatc-aagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacatta 306  Q
    |||||||||| ||||||||| ||| || | ||||  |||||| |||||||| | || |||||||||||| | | ||||||     |||||||||||||||    
T  32438168 tcaagtaatcaatcaattttgtttcaaacgaagagtgaataatacacctataaactctagttttgagagtagtaaatttgagttgaccaacttaacatta 32438069  T
Q  307 aacat 311  Q
    |||||    
T  32438068 aacat 32438064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 33407187 - 33407291
Alignment:
Q  98 caaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaaca 197  Q
    |||||| | ||||||||||||||||||||| ||| |  |||||||||||||||||||||||| |||||| |||||||||    || |||||| |||||||    
T  33407187 caaaagggtttatgacatcaaacatgattacttaga--cattttcttcttcttgtttttgaa-ttcaagtctaatttta---ctatatatttcatcaaca 33407280  T
Q  198 atattataaat 208  Q
    |||||||||||    
T  33407281 atattataaat 33407291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 3839405 - 3839277
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    ||||||||||||||| ||| ||||||| |||| ||| | || |||||||||| ||||||  ||| | | |||||||||||| | | | |||||| |||||    
T  3839405 tccaaaagtgcttataacaccaaacataattacttacacacgttttcttcttgttgttt--gaagt-cgagcctaattttacagaaaaatatttcatcaa 3839309  T
Q  196 caatattataaatcaagtaatcgatcaatttt 227  Q
    ||| ||||||||||||| ||||||||||||||    
T  3839308 caacattataaatcaagcaatcgatcaatttt 3839277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 30053958 - 30053847
Alignment:
Q  107 ttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataa 206  Q
    |||||||| ||||||| |||| |||| |||||||||||||| |||||| |  | ||||| |||||||||| |  || |||||| |||||||| |||||||    
T  30053958 ttatgacaccaaacataattacttatttacattttcttcttattgtttgt-tagttcaatcctaattttagaggtaaatatttcatcaacaacattataa 30053860  T
Q  207 atcaagtaatcga 219  Q
    || || |||||||    
T  30053859 attaaataatcga 30053847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 37204797 - 37204698
Alignment:
Q  292 accaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttat 391  Q
    ||||| |||||||||||| |||| | ||||  |||||   |||||||| ||||   ||| |||||||| ||||||||||| |||||||||||||||||||    
T  37204797 accaatttaacattaaacttccacataaacattttttatctgagtttgttgaagggagggtaatggtgaaaatattttatgacttaaatgaccaatttat 37204698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 43230828 - 43230956
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    ||||||| ||||||||||||||||   || ||| |||||||||| |||| |||||||  |||| ||  | | |||||| | ||| |||||| ||||||||    
T  43230828 aaaagtgtttatgacatcaaacat---tacttacatacattttcatcttattgttttccaatt-cactctttattttacagataaatatttcatcaacaa 43230923  T
Q  199 tattataaatcaagtaatcgatcaattttattt 231  Q
     | |||||||||| ||||||||||| |||||||    
T  43230924 caatataaatcaattaatcgatcaaatttattt 43230956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 46435576 - 46435688
Alignment:
Q  118 aacatgattatttatatacattttcttcttcttgtttttgaat---ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagta 214  Q
    |||||||||||||||  | |||||||| ||||||||||| | |   |||||   |||||||| | ||| |||||| ||||||||||||||||||||| ||    
T  46435576 aacatgattatttatgcatattttcttattcttgttttttattgaattcaactataattttagaaataaatatttcatcaacaatattataaatcaaata 46435675  T
Q  215 atcgatcaatttt 227  Q
    |  ||||||||||    
T  46435676 aatgatcaatttt 46435688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 394
Target Start/End: Original strand, 32450396 - 32450509
Alignment:
Q  281 aatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaat 380  Q
    |||||| ||||| |||||||||||||||| || | | |||  | |||| |  ||||||||||||| || ||||||| ||||  |||||| | ||||||||    
T  32450396 aatttgaacaaatcaacttaacattaaacgtctacataaataccttttaaccgagtttgatgaaaataagataatgatgcatgtattttctgacttaaat 32450495  T
Q  381 gaccaatttataac 394  Q
    || |||||||||||    
T  32450496 gatcaatttataac 32450509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 32711365 - 32711248
Alignment:
Q  195 acaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaac 293  Q
    |||||||||||||| ||||||||||| ||||||||||  |||||| || |||||| ||| ||||||   |||||||| |||||  | |||||||| |  |    
T  32711365 acaatattataaattaagtaatcgatgaattttatttcaaatcaacactgaataatacatctatgaatcttagttttaagagcggtgaatttggatatgc 32711266  T
Q  294 caacttaacattaaacat 311  Q
     | |||||||||||||||    
T  32711265 tatcttaacattaaacat 32711248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 9003628 - 9003588
Alignment:
Q  191 atcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  9003628 atcaataatattataaatcaagtaattgatcaattttattt 9003588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 394
Target Start/End: Original strand, 32297269 - 32297464
Alignment:
Q  199 tattataaatcaagtaatcgatcaattttatttgaa-tcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaac 297  Q
    ||||||||||| ||||| | | ||||||| ||| || ||||||  |||||  || | ||||| || ||||||||||| |  | |||| ||||| ||||||    
T  32297269 tattataaatccagtaaacaagcaattttttttcaaatcaagattgaatagtacgcatatgaactctagttttgagaacggtgaattcggacataccaac 32297368  T
Q  298 ttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||| ||||||  |||| | |||| |||||| || || |||||| ||| || ||| ||| |||| || |||||| ||||||||||||||||| ||||    
T  32297369 ttaa-attaaatctccacataaacactttttaatcgaatttgataaaaatatgatgatgatgcacatgttttatgacttaaatgaccaatttctaac 32297464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 33589378 - 33589262
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttatttgaa-tcaagacagaataacacacctatga 259  Q
    ||||||| ||| |||| | ||| |||||| ||||||||| |||||||| | ||||| |||||||||| | | || ||||||  |||||| |||| |||||    
T  33589378 ttcaagcataactttacagataaatatttcatcaacaatgttataaattaggtaattgatcaattttgtgtcaaatcaagattgaataatacacatatga 33589279  T
Q  260 gctttagttttgagagc 276  Q
     || |||||||||||||    
T  33589278 actctagttttgagagc 33589262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 38362665 - 38362622
Alignment:
Q  184 atattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||    
T  38362665 atatttcatcaacaatattataaatcaattaatcaatcaatttt 38362622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 44594342 - 44594408
Alignment:
Q  161 ttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    |||||| ||||||||| | ||| | |||| |||||||||||||||||| ||  ||||||||||||||    
T  44594342 ttcaagtctaattttacaaataaacatttcatcaacaatattataaattaataaatcgatcaatttt 44594408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 30053770 - 30053685
Alignment:
Q  294 caacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaa 379  Q
    ||||||| || || ||||||| | || | |||||| ||||||||||||| || ||  ||||||||||| ||||||||| |||||||    
T  30053770 caacttagcaatacacatccacataagcactttttaattgagtttgatggaaatataataatggtgcatatattttatgacttaaa 30053685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 45123182 - 45123141
Alignment:
Q  190 tatcaacaatattataaatcaagtaatcgatcaattttattt 231  Q
    |||||||||||||||||||||||||| || | ||||||||||    
T  45123182 tatcaacaatattataaatcaagtaaacggttaattttattt 45123141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 16600670 - 16600313
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||  |||||| |||||||||||| ||| ||||||||||| | | | |||||||| ||||||||||||||||||||| ||||| ||||||    
T  16600670 ttcagccaacttcattaaaaaatgcttatagaccctttgacattaagatgataggttcaaaagtgtttatgacatcaaacatgattacttatacacattt 16600571  T
Q  141 t-cttcttc---ttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaat 235  Q
    | ||| ||    || |||||||||| |||||||||||||| | | | |||||| |||||| | ||||||| ||||||||||| | |||||||||| ||||    
T  16600570 ttcttttttattttatttttgaatt-caagcctaattttacagacaaatatttgatcaaccacattataattcaagtaatcggtaaattttattttgaat 16600472  T
Q  236 caagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgag 335  Q
    |||||  |||||||| ||||||||||  |||||||||||||||| || |||||||||  |||||||||||||||||||| | |||| |||||||| | ||    
T  16600471 caagagcgaataacagacctatgagcactagttttgagagcaatgaacttggacaaataaacttaacattaaacatccacataaacactttttgacttag 16600372  T
Q  336 tttgatgaaattaggataatggtgcaaatattttattacttaaatgaccaatttataac 394  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16600371 tttgattaaattaggataatggtgcaaatattttatgacttaaatgaccaatttataac 16600313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 384
Target Start/End: Original strand, 33401534 - 33401813
Alignment:
Q  96 tccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    ||||||| |||||||||||||||||||||||| ||  | |||||||||| ||   |||||||||||||||||||||||||| ||||| |||||| |||||    
T  33401534 tccaaaaatgcttatgacatcaaacatgattacttgaaaacattttcttttt---gtttttgaatttcaagcctaattttacatataaatatttgatcaa 33401630  T
Q  196 caatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaacc 294  Q
    ||||||||||||||| ||||||  |||||||| ||| |||||||||       |||||| ||||| || |||||||||||||||||||||||||||||||    
T  33401631 caatattataaatcacgtaatccgtcaattttgttttgaatcaaga-------acacacatatgacctctagttttgagagcaattaatttggacaaacc 33401723  T
Q  295 aacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgacc 384  Q
    || ||||||||||||||||| | |||| ||||||||| || ||| |||||| ||||||||| |||||||||||||||  |||||| ||||    
T  33401724 aagttaacattaaacatccacataaacactttttgatcgaatttaatgaaactaggataatagtgcaaatattttatggcttaaaggacc 33401813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 394
Target Start/End: Original strand, 27499433 - 27499562
Alignment:
Q  264 tagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaa 363  Q
    ||||||||||||  |||||||| |||| | |||||||||||||||  || | | |||   ||||| |||||||||||||||| || |||| ||||| |||    
T  27499433 tagttttgagagtgattaatttagacatagcaacttaacattaaagttcaa-ataaatattttttaattgagtttgatgaaaataagatagtggtgtaaa 27499531  T
Q  364 tattttattacttaaatgaccaatttataac 394  Q
    |||||||| || |||||||||||||||||||    
T  27499532 tattttatgacataaatgaccaatttataac 27499562  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 34367294 - 34367194
Alignment:
Q  116 caaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaa 215  Q
    ||||||| |||| ||||||||||||||||||| ||||||   |||| ||| |||||||||| | ||| |||||| |||||||| ||| ||||||||||||    
T  34367294 caaacataattacttatatacattttcttcttattgtttgccaatt-caatcctaattttagagataaatatttcatcaacaacattttaaatcaagtaa 34367196  T
Q  216 tc 217  Q
    ||    
T  34367195 tc 34367194  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 385
Target Start/End: Original strand, 5473948 - 5474231
Alignment:
Q  101 aagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaata 200  Q
    ||||| |||| |||||||| |||||||   | | ||||||||||||| || |||||  || ||||   |||||||| | ||| |||||| || || ||||    
T  5473948 aagtgtttataacatcaaatatgattaccaacacacattttcttcttgtttttttt--atatcaaatataattttaaagataaatatttcattaataata 5474045  T
Q  201 ttataaatcaagtaatcgatcaattttatttgaa-tcaagacagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaactt 299  Q
    ||||||| | ||||| | ||||||||| ||| || ||||||  |||||| |||| ||||| || | |||||||||||  |  ||||| ||| |||||  |    
T  5474046 ttataaaactagtaaacaatcaattttgtttcaaatcaagattgaataatacacatatgaactctggttttgagagcggtggatttgaacataccaatct 5474145  T
Q  300 aacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgacca 385  Q
    |||||||||  | || | |||| |||||| | | |||||||||||| |||||| ||| |||| ||||||||| | ||||| |||||    
T  5474146 aacattaaatgtgcacataaacactttttaactaagtttgatgaaaataggatgatgatgcatatattttatgaattaaaagacca 5474231  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 5552639 - 5552512
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaa 198  Q
    ||||||| |||||||| |||||||||||| ||| | | ||||||| |||||| ||||  |||| ||| | ||||||||   ||| || ||| || |||||    
T  5552639 aaaagtgtttatgacaacaaacatgattaattacaaatattttctccttcttattttctaatt-caaacttaattttaacgataaatgtttaatgaacaa 5552541  T
Q  199 tattataaatcaagtaatcgatcaatttt 227  Q
    |||||||||| ||||||||||| ||||||    
T  5552540 tattataaattaagtaatcgattaatttt 5552512  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 36268110 - 36267944
Alignment:
Q  57 aaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgttttt 156  Q
    ||||||||||||| |||| ||||| ||| |  |||| | | ||||||||||| ||| || ||| ||||||| ||| ||  |||||||   ||||||||||    
T  36268110 aaaaagtgcttattgaccatttaatattgatgtggtaggttcaaaagtgcttgtgatattaaatatgattacttacatttattttct---tcttgttttt 36268014  T
Q  157 gaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||| ||||| | |||||||| | |||  ||||| ||||||| |||||| |||||||| ||| |||||||||    
T  36268013 gaa-ttcaaacataattttacaaataagtatttaatcaacactattattaatcaagttatcaatcaatttt 36267944  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 932587 - 932479
Alignment:
Q  285 tggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttgatgaaattaggataatggtgcaaatattttattacttaaatgacc 384  Q
    |||||| || || ||||||||||||  ||| | ||||  ||||| || |||||||||||||  | ||||||| | |||||||||||| | ||||| ||||    
T  932587 tggacatacaaatttaacattaaacgcccacataaacaatttttaatcgagtttgatgaaaacaagataatgattcaaatattttatgatttaaaggacc 932488  T
Q  385 aatttataa 393  Q
    |||||||||    
T  932487 aatttataa 932479  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 8822443 - 8822379
Alignment:
Q  194 aacaatattataaatcaagtaatcgatcaattttattt-gaatcaagacagaataacacacctat 257  Q
    ||||| ||||||||||||||||||||||||||| ||||  || |||||| |||||| ||||||||    
T  8822443 aacaacattataaatcaagtaatcgatcaatttcatttcaaaccaagactgaataatacacctat 8822379  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 10099625 - 10099729
Alignment:
Q  186 attttatcaacaatattataaatcaagtaatcga-tcaattttatttgaatcaagacagaataacacacctatgagctttagttttgagagcaattaatt 284  Q
    |||| |||||||| |||||||||||||||||||| | ||| |  ||||||| ||||| ||| || ||| |||||| | ||| |||||||||| || ||||    
T  10099625 atttcatcaacaacattataaatcaagtaatcgattgaatatgttttgaataaagaccgaaaaatacaactatgaaccttaattttgagagcgatgaatt 10099724  T
Q  285 tggac 289  Q
    |||||    
T  10099725 tggac 10099729  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 932711 - 932643
Alignment:
Q  143 ttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagt 213  Q
    |||||||||||||| |  |||||  ||||||||| | ||| |||||| |||||||||||||||||||||||    
T  932711 ttcttcttgtttttaa--ttcaaagctaattttacagataaatatttcatcaacaatattataaatcaagt 932643  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 32424222 - 32424281
Alignment:
Q  168 ctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaatttt 227  Q
    ||||||||| ||||| ||||||  ||||||||||||||||| || |||| ||||||||||    
T  32424222 ctaattttacatataaatatttcctcaacaatattataaattaaataatggatcaatttt 32424281  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 4248965 - 4249007
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacatttt 141  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||    
T  4248965 aaaagtgtttatgacaccaaacataattatttatatacatttt 4249007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 5177433 - 5177529
Alignment:
Q  98 caaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaa 195  Q
    |||||||| |||| ||||||||||| || | ||||  |||||||||| || ||||||||  ||||||| |||||||||||| ||| ||| || |||||    
T  5177433 caaaagtgtttataacatcaaacataatcacttatgcacattttcttgttgttgttttt-tatttcaaacctaattttataaataaatacttcatcaa 5177529  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 17053558 - 17053615
Alignment:
Q  99 aaaagtgcttatgacatcaaacatgattatttatatacattttcttcttcttgttttt 156  Q
    ||||||| ||||||||  ||||||||||| ||| ||||||||||||||| || |||||    
T  17053558 aaaagtgtttatgacacaaaacatgattacttacatacattttcttcttatttttttt 17053615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 21076304 - 21076415
Alignment:
Q  112 acatcaaacatgattatttatatacattttcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaa 211  Q
    |||||||||||||||| ||| ||||||||  || ||||||||| |||| |||||  ||||||||| | ||| ||| |||||||| ||  |||||||| ||    
T  21076304 acatcaaacatgattacttacatacattt--tttttcttgtttctgaa-ttcaaatctaattttacaaataaata-tttatcaagaacgttataaattaa 21076399  T
Q  212 gtaatcgatcaatttt 227  Q
    ||||| ||| ||||||    
T  21076400 gtaattgattaatttt 21076415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 41 - 391
Target Start/End: Original strand, 508077 - 508412
Alignment:
Q  41 ttcagccaacatcgctaaaaagtgcttatagaccttttaacattaagatggtggatccaaaagtgcttatgacatcaaacatgattatttatatacattt 140  Q
    |||||||||| ||| ||||||||| ||||||||| |||||| |||||||||| | ||||||| || ||||||||||||||||||||| ||||| ||||||    
T  508077 ttcagccaacttcgttaaaaagtgtttatagaccatttaacgttaagatggtaggtccaaaaatgtttatgacatcaaacatgattacttatacacattt 508176  T
Q  141 tcttcttcttgtttttgaatttcaagcctaattttatatatagatattttatcaacaatattataaatcaagtaatcgatcaattttattt-gaatcaag 239  Q
    | ||  || ||||||| ||||||||| ||||||||| ||||| | |||| ||              ||||||||||  || |||||| ||| ||||||||    
T  508177 tttt--tcctgttttttaatttcaagtctaattttacatataaacatttgat--------------atcaagtaattaattaattttgttttgaatcaag 508260  T
Q  240 acagaataacacacctatgagctttagttttgagagcaattaatttggacaaaccaacttaacattaaacatccatacaaacgctttttgattgagtttg 339  Q
    || |||||||||||| |  ||| ||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| | |||| | |||||||||||||||    
T  508261 accgaataacacacccacaagccttaattttgagagcaatgaatttggataaatcaacttaacattaaacatccacataaacacattttgattgagtttg 508360  T
Q  340 atgaaattaggataatggtgcaaatattttattacttaaatgaccaatttat 391  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||||||||    
T  508361 atgaaattaggataatggtgcaaatattctatgacataaatgaccaatttat 508412  T

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