View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7531_low_9 (Length: 238)
Name: NF7531_low_9
Description: NF7531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7531_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29697876 - 29697649
Alignment:
| Q |
1 |
ccagagttcgaacctcaaatttctcacttattcacttttaaggaataagtatatagccaacatgcaattacttgagagaaatagttttctaatnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29697876 |
ccagagttcgaacctcaaatttctcacttattcacttttaaggaataagtatatagccaacatgcaattacttgagagaaatagttttctaataaaaaaa |
29697777 |
T |
|
| Q |
101 |
ntagtaattttaattatgctagtagatgagagaaaattatttaataaagtaattttgataaacaaaaattagcttatgcttgatataaagatctctaaaa |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29697776 |
atagtaattttaattatgttagtagatgagagaaaattatttaataaagtaattttgataaacaaaaattagcttatgcttgatataaagatctctaaaa |
29697677 |
T |
|
| Q |
201 |
ctaatgttgaatatcaattcgattgatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29697676 |
ctaatgttgaatatcaattcgattgatg |
29697649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 28960564 - 28960411
Alignment:
| Q |
50 |
tatatagccaacatgcaattacttgagagaaatagttttctaatnnnnnnnntagtaattttaattatgctagtagatgagagaaaattatttaataaag |
149 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
28960564 |
tatatagccaacatgcaattatttgagagaagtgattttctaataaaaaaattagtaattttaattatgtc--tagatgagagaaggttatttgttaaag |
28960467 |
T |
|
| Q |
150 |
taattttgataaacaaaaattagcttatgcttgatataaagatctctaaaactaatgt |
207 |
Q |
| |
|
||||||||| ||| | ||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
28960466 |
taattttgacaaatagaaattggcttatgcttgatgtaaaga--tctaaaactaatgt |
28960411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 29785341 - 29785270
Alignment:
| Q |
102 |
tagtaattttaattatgctagtagatgagagaaaattatttaataaagtaattttgataaacaaaaattagcttat |
177 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
29785341 |
tagtaattttaattatgtcagtagatgagagaaaaatatt----aaagtaattttgacaaacaaaaattagcttat |
29785270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University