View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7532_high_1 (Length: 666)
Name: NF7532_high_1
Description: NF7532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7532_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 15 - 637
Target Start/End: Complemental strand, 960544 - 959910
Alignment:
| Q |
15 |
atgaacaataaattggagtataatactgctttctctttagagtagctccaaaactcagcttcacataaagggttacaattatacttttaatccaacaata |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
960544 |
atgaacaataaatttaagtataatactgctttctctttagagaagctccaaaactcaacttcatataaatggttaca-ttatacttttaatccaacaata |
960446 |
T |
|
| Q |
115 |
aattgatttaaatggtaagagattagagctccttaaataagtggttagagttcaatttccagctcttgcatatgaaaaaatcggttgagatgagagaact |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
960445 |
aattggtttaaatggtaagagattagagctccttaaacaagtggttagggttcaatcttcagctcttgcatatgaaaaaatggattgagatgagagaact |
960346 |
T |
|
| Q |
215 |
tatcttatgtgtgtgacatatcctctgatagagattaataatcattgttaaccaatggtaaaaacttcgtacatagtaaaaattgattgagataggagaa |
314 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
960345 |
tatcttatgtgtctcacatatcctcggatagagattaataatcattgttaaccaacggtaaaaacttcgtacatagtaaaaatcgattgagatgggagaa |
960246 |
T |
|
| Q |
315 |
ctcatcttacgtgtatgatttatagaaagtgaatactcacacatatgacaaaatcatgtttagaattctaaaatcatgtttacctctcatagaaagtgaa |
414 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960245 |
ctcatcttacatgtatgatttatggaaagtgaatactcacacatatgacaaaatcatgtttagaattctaaaatcatgtttacctctcatagaaagtgaa |
960146 |
T |
|
| Q |
415 |
tccaatcatataattaatcaattttacaaaataaaattgattagaaatcatgtttaacaaatgtttaaccaaaacacacttaggatcatgatgacaagtg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
960145 |
tccaatcatataattaatcaattttacaaaataaaattcattagaaatcatgtttaacaaatgtttaactaaaacacacttaggatcatgatgacaagtg |
960046 |
T |
|
| Q |
515 |
tttgaaaaccaca------------agagaagtacaaaacccctcttatcttattactttgcttcaccaattattgagctaagttgtaaaaagcatgctt |
602 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
960045 |
tttgaaaaccacaacccttacccttagagaagtacaaaacccctcttatcttattactttgcttcaccaattattgagctaagttgtgaaaagcatgctt |
959946 |
T |
|
| Q |
603 |
tcaccacgtttttggtg-aacatgtgggatggtaat |
637 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
959945 |
tcaccacgtttatggtgaaacatgtgggatggtaat |
959910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 5632889 - 5632921
Alignment:
| Q |
106 |
ccaacaataaattgatttaaatggtaagagatt |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5632889 |
ccaacaataaattgatttaaatggtaagagatt |
5632921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 9798034 - 9798076
Alignment:
| Q |
108 |
aacaataaattgatttaaatggtaagagattagagctccttaa |
150 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
9798034 |
aacaataaattaatttaagtggtaagagatttgagctccttaa |
9798076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 6743224 - 6743256
Alignment:
| Q |
106 |
ccaacaataaattgatttaaatggtaagagatt |
138 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
6743224 |
ccaacaataaattgattcaaatggtaagagatt |
6743256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University