View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7532_low_2 (Length: 528)
Name: NF7532_low_2
Description: NF7532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7532_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 312 - 456
Target Start/End: Original strand, 6649316 - 6649460
Alignment:
| Q |
312 |
cgatcaaacgaatatttcgattttgagtttgtcactgatggatctaacaacttccattctccgccgaaaccctacgattcgttttttcgtcttttcaaac |
411 |
Q |
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| T |
6649316 |
cgatcaaacgaatatttcgattttgagtttgtcactgatggatctaacaacttccattctccgccgaaaccctacgattcgttttttcgtcttttcaaac |
6649415 |
T |
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| Q |
412 |
ttcacttgcacgcaaactacgtcattttcagatctatcggtgcaa |
456 |
Q |
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| T |
6649416 |
ttcacttgcacgcaaactacgtcattttcagatctatcggtgcaa |
6649460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 6649025 - 6649102
Alignment:
| Q |
19 |
aagaaaaaggaaattaagtattggctggtccatgaaaggtgtttttgcttgctcttgtggcagtgtactcaagaaact |
96 |
Q |
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| T |
6649025 |
aagaaaaaggaaattaagtattggctggtccatgaaaggtgtttttgcttgctcttgtggcagtgtactcaagaaact |
6649102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 6649195 - 6649255
Alignment:
| Q |
191 |
aacaaatcacatgctgtgaaaatttctttctgatgccgattctttcacacctcactgtaag |
251 |
Q |
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| T |
6649195 |
aacaaatcacatgctgtgaaaatttctttctgatgccgattctttcacacctcactgtaag |
6649255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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