View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7532_low_3 (Length: 444)
Name: NF7532_low_3
Description: NF7532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7532_low_3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 8405022 - 8404596
Alignment:
| Q |
18 |
aaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagcagcttcacgctcagagtaactacccttt |
117 |
Q |
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| T |
8405022 |
aaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagcagcttcacgctcagagtaactacccttt |
8404923 |
T |
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| Q |
118 |
gcagtgatccgtgcagtgatccgatcgaaaagctcaccacctaaacacaactccatcaccaaatgcacactctctctatcctcataagcacccttgaact |
217 |
Q |
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| T |
8404922 |
gcagtgatccgtgcagtgatccgatcgaaaagctcaccacctaaacacaactccatcaccaaatgcacactctctctatcctcataagcacccttgaact |
8404823 |
T |
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| Q |
218 |
caactatgtttggttgtccacttaagtcctgaaggatcatgatttcccttttaacatcctcaatttctttctttcttgttagctttcgtctcgaaatgga |
317 |
Q |
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| T |
8404822 |
caactatgtttggttgtccacttaagtcctgaaggatcatgatttcccttttaacatcctcaatttctttctttcttgttagctttcgtctcgaaatgga |
8404723 |
T |
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| Q |
318 |
cttacaagcatagtttcttccggtggcattttcggtacaaagataagtgacaccaaattgacccctccctagttcctttccaatactatagagtgtcttc |
417 |
Q |
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| T |
8404722 |
cttacaagcatagtttcttccagtggcattttcggtacaaagataagtgacaccaaattgacccctccctagttcctttccaatactatagagtgtcttc |
8404623 |
T |
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| Q |
418 |
atgtcaatgtatggccttcctaatatt |
444 |
Q |
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| T |
8404622 |
atgtcaatgtatggccttcctaatatt |
8404596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 8403507 - 8403410
Alignment:
| Q |
136 |
atccgatcgaaaagctcaccacctaaacacaactccatcaccaaatgcacactctctctatcctcataagcacccttgaactcaactatgtttggttg |
233 |
Q |
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| T |
8403507 |
atcctatcaaaaagttcaccacctttacaaacctccatcaccaaatacacattctgtttatcctcataagctcctctgaattcaactatattcggttg |
8403410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 43465119 - 43465160
Alignment:
| Q |
145 |
aaaagctcaccacctaaacacaactccatcaccaaatgcaca |
186 |
Q |
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| T |
43465119 |
aaaagctcaccaccagcacacaactccatcaccaaatgcaca |
43465160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 18400073 - 18400033
Alignment:
| Q |
136 |
atccgatcgaaaagctcaccacctaaacacaactccatcac |
176 |
Q |
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| T |
18400073 |
atccgatcgaaaagctcaccacctgcacacaattccatcac |
18400033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 40532026 - 40531981
Alignment:
| Q |
194 |
tatcctcataagcacccttgaactcaactatgtttggttgtccact |
239 |
Q |
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| T |
40532026 |
tatcctcataagcacctttaaactcaacaatatttggttgtccact |
40531981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 40536990 - 40536946
Alignment:
| Q |
195 |
atcctcataagcacccttgaactcaactatgtttggttgtccact |
239 |
Q |
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| T |
40536990 |
atcctcataagcacctttaaactcaacaatatttggttgtccact |
40536946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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