View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7532_low_4 (Length: 409)
Name: NF7532_low_4
Description: NF7532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7532_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 13139513 - 13139910
Alignment:
| Q |
12 |
tactgcctcaccgctttccatgacgactctcctcactttcccgcattttccttccaattttccctcactttcccgcttccctaacaaccgcttctctcca |
111 |
Q |
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| T |
13139513 |
tactgcctcaccgctttccatgacgactctcctcactttcccgcattttccttccaattttcctacactttcccgcttccctaacaaccgtttctctcca |
13139612 |
T |
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| Q |
112 |
cctcgccgtctctgttcaacgctaactgacactgccattgtatggttcaaacacgatctccgaacagacgatcaccctggactcctcactgctgcttcca |
211 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13139613 |
cctcgccgtctctgttcaaccgcaactgacactgccattgtatggttcaaacacgatctccgaactgacgatcaccctggactcctcactgctgcttcca |
13139712 |
T |
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| Q |
212 |
attttcaatccttcgttccaatttatgtattcgatcaccgtattctttcgagtaagttcaaattcaaacttcataatcactcatcgaattgaaatgttag |
311 |
Q |
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|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13139713 |
attttcaatcgttagttccaatttatgtattcgatcaccgcattctttcgagtaagttcaaattcaaacttcatcatcactcatcgaattgaaatgttag |
13139812 |
T |
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| Q |
312 |
aaactgactctattgatgctgttttgcttgctccgcagggttttccgatgaaatgatggaactcgttgtgtttgctgttcgagatttgaggaagtcgt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13139813 |
aaactgactctattgatgctgttttgcttgctccgcagggttttccgatgaaatgctggaactcgttgtgttcgctgttcgagatttgaggaagtcgt |
13139910 |
T |
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