View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7532_low_5 (Length: 350)
Name: NF7532_low_5
Description: NF7532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7532_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 6026149 - 6026466
Alignment:
| Q |
1 |
agaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaagc |
100 |
Q |
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| T |
6026149 |
agaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaagc |
6026248 |
T |
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| Q |
101 |
agaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtattatt |
200 |
Q |
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| T |
6026249 |
agaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtattatt |
6026348 |
T |
|
| Q |
201 |
ttccattttaattatctactacattgtattatgactcagaatgatgatctttcatctcattctctagttcttatgtagtttgtacaattctcatattcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6026349 |
ttccattttaattatctactacattgtattatgactcagaatgatgatcttttatctcattctctagttcttatgtagtttgtacaatcctcatattcaa |
6026448 |
T |
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| Q |
301 |
aggagttttggttattta |
318 |
Q |
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| T |
6026449 |
aagagttttggtaattta |
6026466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
124 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
183 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
26 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
99 |
Q |
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||||||||||||||||||||||||||||| || |||||||| || |||||||||||| | |||||| ||||| |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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