View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7532_low_8 (Length: 208)
Name: NF7532_low_8
Description: NF7532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7532_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 42743897 - 42744070
Alignment:
| Q |
21 |
ccagacatgtactaaaatgttttctaggatatgagacaaaaagacaatgcagaagaggtagagaatccaagacaataaagtttacctcaataaaaaccaa |
120 |
Q |
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| T |
42743897 |
ccagacatgtactaaaatgttgtctaggatatgagacaaaaagacaatgcagaagaggtagagaatccaagacaataaagtttacctcaataaaaaccaa |
42743996 |
T |
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| Q |
121 |
aagggcattgaaataaggtgcttgctcaaacataaagccagtgttctgtgtaaaccactctatgttcccttcat |
194 |
Q |
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| T |
42743997 |
aagggcattgaaataaggtgcttgctcaaacataaagccagtgttttgtgtaaaccactctatgttcccttcat |
42744070 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 42748704 - 42748794
Alignment:
| Q |
104 |
acctcaataaaaaccaaaagggcattgaaataaggtgcttgctcaaacataaagccagtgttctgtgtaaaccactctatgttcccttcat |
194 |
Q |
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| T |
42748704 |
acctcaataaaaaccaaaatggcattgaaatagggtgctatttcgaacataaagccagtgttttgtgcgaaccattgtatgtccccttcat |
42748794 |
T |
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