View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7533_low_3 (Length: 300)
Name: NF7533_low_3
Description: NF7533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7533_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 55454492 - 55454757
Alignment:
| Q |
18 |
ctaatacaagtgtatggtaaaccttcccattcccaaaacttggtcctgtaaaaaagatatgcattattaatcataccaacagtgacatgtagtatttctg |
117 |
Q |
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| T |
55454492 |
ctaatacaagtgtatggtaaaccttcccattcccaaaacttggtcctgtaaaaaagatatgcattattaatcataccaacagtgacatgtagtatttctg |
55454591 |
T |
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| Q |
118 |
ttttcttttgcaaaacagaaaagnnnnnnnnnntcaaatattttgcatgaataaaataggaagtacctgttagtccaacaccaccaactattgtgccatt |
217 |
Q |
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| T |
55454592 |
ttttcttttgcaaaacagaaagaaaaaaaaaaatcaaatattttgcatgaataaaataggaagtacctgttagtccaacaccaccaactattgtgccatt |
55454691 |
T |
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| Q |
218 |
tctaagaagaattgaagaataataatgtctgtctgtgttgcaagcggcaacaccgacactccatgg |
283 |
Q |
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| T |
55454692 |
tctaagaagaattgaagaataataatgtctgtctgtgttgcaagcggcaacaccgacactccatgg |
55454757 |
T |
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