View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7534_high_1 (Length: 550)

Name: NF7534_high_1
Description: NF7534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7534_high_1
NF7534_high_1
[»] chr4 (19 HSPs)
chr4 (20-538)||(51577991-51578509)
chr4 (24-143)||(21433901-21434021)
chr4 (303-431)||(49106480-49106609)
chr4 (304-381)||(21503706-21503784)
chr4 (303-381)||(3461143-3461222)
chr4 (45-143)||(33414015-33414114)
chr4 (303-381)||(49108634-49108713)
chr4 (58-120)||(17181271-17181333)
chr4 (26-116)||(45654067-45654157)
chr4 (47-120)||(16457934-16458007)
chr4 (50-142)||(32286249-32286341)
chr4 (58-143)||(3688595-3688682)
chr4 (303-381)||(11652393-11652472)
chr4 (45-143)||(15134579-15134678)
chr4 (303-381)||(26984668-26984747)
chr4 (303-381)||(26998741-26998820)
chr4 (303-381)||(50077200-50077279)
chr4 (58-120)||(53127987-53128049)
chr4 (58-137)||(2324783-2324863)
[»] chr5 (13 HSPs)
chr5 (46-143)||(3907682-3907780)
chr5 (303-381)||(7524995-7525074)
chr5 (47-143)||(25545246-25545343)
chr5 (46-139)||(31273069-31273163)
chr5 (297-381)||(4103266-4103351)
chr5 (27-143)||(42420011-42420128)
chr5 (303-381)||(1716452-1716532)
chr5 (24-143)||(36059235-36059355)
chr5 (303-381)||(3643667-3643746)
chr5 (57-120)||(38029564-38029627)
chr5 (48-138)||(41169405-41169496)
chr5 (58-143)||(22399798-22399884)
chr5 (58-142)||(27195281-27195366)
[»] chr8 (16 HSPs)
chr8 (47-142)||(40175923-40176019)
chr8 (28-143)||(34504405-34504521)
chr8 (45-142)||(42072672-42072770)
chr8 (46-142)||(40696201-40696298)
chr8 (45-143)||(40694641-40694740)
chr8 (303-381)||(41841153-41841232)
chr8 (48-142)||(35586419-35586513)
chr8 (303-381)||(44879010-44879089)
chr8 (303-381)||(44880832-44880911)
chr8 (47-143)||(2288613-2288710)
chr8 (59-143)||(26018490-26018573)
chr8 (68-143)||(38835035-38835111)
chr8 (303-433)||(10944348-10944479)
chr8 (303-381)||(40054339-40054418)
chr8 (58-143)||(8402506-8402592)
chr8 (33-81)||(34504377-34504425)
[»] chr2 (19 HSPs)
chr2 (47-143)||(4237278-4237375)
chr2 (303-381)||(2841018-2841097)
chr2 (48-142)||(1469768-1469863)
chr2 (58-143)||(3466415-3466501)
chr2 (45-141)||(42094233-42094329)
chr2 (49-143)||(37810174-37810269)
chr2 (58-143)||(44247563-44247649)
chr2 (24-143)||(25666826-25666946)
chr2 (307-381)||(6471710-6471785)
chr2 (45-139)||(33069199-33069294)
chr2 (45-142)||(42029354-42029452)
chr2 (24-116)||(18719724-18719814)
chr2 (48-143)||(42251178-42251274)
chr2 (303-381)||(10763879-10763958)
chr2 (303-381)||(30732035-30732114)
chr2 (303-381)||(30734015-30734094)
chr2 (303-381)||(32918107-32918186)
chr2 (86-143)||(12779529-12779587)
chr2 (79-142)||(17383789-17383853)
[»] chr1 (24 HSPs)
chr1 (47-142)||(23317923-23318019)
chr1 (24-142)||(38663642-38663761)
chr1 (45-143)||(34437610-34437708)
chr1 (303-381)||(11872482-11872561)
chr1 (45-143)||(31970148-31970247)
chr1 (303-423)||(14681626-14681747)
chr1 (47-143)||(40668943-40669040)
chr1 (303-381)||(14654341-14654420)
chr1 (303-381)||(14664132-14664211)
chr1 (303-381)||(14669710-14669789)
chr1 (303-381)||(14683777-14683856)
chr1 (303-381)||(14706115-14706194)
chr1 (303-381)||(14708605-14708684)
chr1 (303-381)||(33988097-33988176)
chr1 (303-381)||(38175531-38175610)
chr1 (58-139)||(45563091-45563173)
chr1 (303-423)||(14652552-14652673)
chr1 (303-423)||(14662343-14662464)
chr1 (303-423)||(14674508-14674629)
chr1 (303-382)||(14667111-14667191)
chr1 (57-143)||(731358-731445)
chr1 (303-381)||(14679886-14679965)
chr1 (303-381)||(14716318-14716397)
chr1 (58-143)||(2542730-2542816)
[»] chr3 (18 HSPs)
chr3 (58-143)||(36480735-36480821)
chr3 (45-143)||(29955050-29955149)
chr3 (45-143)||(30004204-30004303)
chr3 (46-143)||(14345179-14345277)
chr3 (48-143)||(35357345-35357441)
chr3 (47-103)||(35527126-35527182)
chr3 (57-143)||(37341248-37341334)
chr3 (76-142)||(45332573-45332640)
chr3 (57-143)||(19158683-19158769)
chr3 (46-143)||(31205382-31205480)
chr3 (24-80)||(35357308-35357364)
chr3 (24-143)||(51541273-51541393)
chr3 (45-124)||(19560641-19560720)
chr3 (45-143)||(49750614-49750713)
chr3 (45-91)||(3901574-3901620)
chr3 (45-142)||(40763397-40763495)
chr3 (67-143)||(40554072-40554149)
chr3 (59-142)||(32881023-32881107)
[»] chr7 (14 HSPs)
chr7 (46-142)||(12275767-12275864)
chr7 (66-143)||(26862941-26863019)
chr7 (57-143)||(7526146-7526233)
chr7 (45-143)||(49106934-49107032)
chr7 (66-143)||(2276305-2276383)
chr7 (46-143)||(3235587-3235685)
chr7 (46-116)||(11201306-11201376)
chr7 (58-143)||(24516581-24516667)
chr7 (48-91)||(7526133-7526176)
chr7 (45-143)||(10056651-10056750)
chr7 (60-118)||(40134440-40134498)
chr7 (58-120)||(47497752-47497814)
chr7 (97-141)||(316389-316434)
chr7 (59-142)||(18802866-18802950)
[»] chr6 (8 HSPs)
chr6 (312-381)||(11333266-11333336)
chr6 (303-375)||(8875716-8875789)
chr6 (58-143)||(6643343-6643429)
chr6 (46-143)||(12731582-12731680)
chr6 (303-381)||(10791653-10791732)
chr6 (303-381)||(10795891-10795970)
chr6 (60-137)||(11650916-11650994)
chr6 (57-103)||(28865434-28865480)
[»] scaffold0003 (1 HSPs)
scaffold0003 (24-143)||(136349-136469)
[»] scaffold0015 (1 HSPs)
scaffold0015 (42-142)||(200987-201087)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 51577991 - 51578509
Alignment:
Q  20 ggcaacacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtg 119  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  51577991 ggcaacacattctaacatatacttatcaacacattcattttgatttgttaaaattcacatgggtcccaccaattcgtgtcggtctcatacaaatttggtg 51578090  T
Q  120 gatccatgtgaattttaaccaatctctaatcctattaaaatttcatgattcacgagagtgccctgcaagagtctcaagatgctgcatgagtctcacgttg 219  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51578091 ggtccatgtgaattttaaccaatctctaatcctattaaaatttcatgattcacgagagtgccctgcaagagtctcaagatgctgcatgagtctcacattg 51578190  T
Q  220 cgaagtcagcaaagtcactgagtttatgttagacataaatccagcttcgaatacttgttccagctcataccattctaggttaggatcaagtgtaatatat 319  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51578191 cgaagtcagcaaagtcactaagtttatgttagacataaatccagcttcgaagacttgttccagctcataccattctaggttaggatcaagtgtaatatat 51578290  T
Q  320 gttcttattagttgatatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccactttagtagcttcctactaggt 419  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51578291 gttcttattagttcatatctaatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccactttagtagcttcctactaggt 51578390  T
Q  420 ttcttatgtgtcacccaaacatcaaacgatatatactaatcttcagtaatgtccaattttaatttaatgagannnnnnnaccacatccaacctcaatttt 519  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  51578391 ttcttatgtgtcacccaaacatcgaacgatatatactaatcttcagtaatgtccaattttaatttaatgagatttttttaccacatccaacctcaatttt 51578490  T
Q  520 actctaatgagaatatttt 538  Q
    |||||||||||||||||||    
T  51578491 actctaatgagaatatttt 51578509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 21434021 - 21433901
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc 123  Q
    ||||||| |||||||   || |||||||||||   |||||| ||||||| |||||||| ||||||||| || ||||||||||||| ||||||||||| ||    
T  21434021 acacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtgggtc 21433922  T
Q  124 -catgtgaattttaaccaatc 143  Q
     ||||||||||||||||||||    
T  21433921 tcatgtgaattttaaccaatc 21433901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 303 - 431
Target Start/End: Complemental strand, 49106609 - 49106480
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccacttt 401  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||| |||| |||||||||||||||||||||||||| ||  |  |||   ||| ||    
T  49106609 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagggggagaagtcacctt 49106510  T
Q  402 agtagcttcctactaggtttcttatgtgtc 431  Q
    |||||||| ||||| | |||||||||||||    
T  49106509 agtagcttgctactggatttcttatgtgtc 49106480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 21503706 - 21503784
Alignment:
Q  304 atcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    |||||||||| ||| ||||||||| |||| | |||||||||| ||| ||||||| |||||||||||||||||| |||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttt 21503784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 3461222 - 3461143
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||  ||||| | ||||||||||||||||||||||||    
T  3461222 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttt 3461143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 33414015 - 33414114
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    |||||||||||  ||||||| ||||||| |||||||| ||||||||| ||  |||||||  ||| ||||||||||| | |||| |||||||||| |||||    
T  33414015 tcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatgaattttaatcaatc 33414114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 49108713 - 49108634
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||  ||||| | ||||||||||||||||||||||||    
T  49108713 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttt 49108634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 17181333 - 17181271
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg 120  Q
    ||||||| ||||||| |||||| ||||||||||| ||  |||||||||||| |||||||||||    
T  17181333 tttgattagttaaaattcacataggtcccaccaaatcacgtgggtctcatataaatttggtgg 17181271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 45654157 - 45654067
Alignment:
Q  26 acattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttg 116  Q
    ||||||||||| || ||| | ||||||||  |||||||| ||||||| |||||||| ||||| ||| || |||||||| |||| |||||||    
T  45654157 acattctaacacatattttttaacacactttttttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttg 45654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 16457934 - 16458007
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg 120  Q
    |||||||||  ||||||| ||||||| |||||||| ||||| ||| || |||||||| |||| |||||||||||    
T  16457934 aacacactctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgg 16458007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 32286249 - 32286341
Alignment:
Q  50 acactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaat 142  Q
    |||||| | ||||||  |||||| ||||||| |||||||||| || ||||| ||  ||| ||||||||| ||||||||||||||||||||||||    
T  32286249 acactcttattgattctttaaaattcacatgagtcccaccaaatcatgtggatca-atataaatttggttggatccatgtgaattttaaccaat 32286341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 3688595 - 3688682
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaattt-ggtggatc-catgtgaattttaaccaatc 143  Q
    ||||||| ||||||| ||||||||||| |||||| || |||||||| |||| || ||| | ||| || ||||||||||||||||||||    
T  3688595 tttgattagttaaaattcacatgggtctcaccaaatcatgtgggtcccatataattttagatgggtcacatgtgaattttaaccaatc 3688682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 11652472 - 11652393
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | |||||||||||||||||| |||||    
T  11652472 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttt 11652393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 15134579 - 15134678
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtg-gatccatgtgaattttaaccaatc 143  Q
    |||||||| ||  ||| ||| ||||||| |||||||||||| || || || | |||||| |||| |||||||||| |  |||||||||||||||||||||    
T  15134579 tcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtcccatataaatttggtgagtcccatgtgaattttaaccaatc 15134678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 26984747 - 26984668
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| |  |||||||||||||||||||||||    
T  26984747 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 26998820 - 26998741
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| |  |||||||||||||||||||||||    
T  26998820 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttt 26998741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 50077279 - 50077200
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| || | |||| | ||||| ||||||||||||||||||    
T  50077279 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaattacttttt 50077200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 53127987 - 53128049
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg 120  Q
    ||||||| |||||||||||||||||||||||||  ||  |||||||  ||| |||||||||||    
T  53127987 tttgattggttaaaactcacatgggtcccaccatatcaagtgggtcctatataaatttggtgg 53128049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 2324783 - 2324863
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaa 137  Q
    ||||||| ||||||| ||||||| ||  |||||| || |||||||| |||| ||||||||||| | |||||| ||||||||    
T  2324783 tttgattggttaaaattcacatgagtttcaccaaatcatgtgggtcccatataaatttggtgggtcccatgtaaattttaa 2324863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 3907780 - 3907682
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||| || |||||||| ||||||| |||||||||||||||||| || |||||||| |||| ||||||||||| | |||||||||||||||||||||    
T  3907780 caacacattctttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatc 3907682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 7524995 - 7525074
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| || | |||| ||||||||||||||||||||||||||    
T  7524995 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattacttttt 7525074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 25545343 - 25545246
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||||||||  ||||||| ||||||| |||| || |||||||||| || ||| |||| |||| |||||| |||| || ||||||||||||||||||||    
T  25545343 aacacactctctttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaatc 25545246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 31273163 - 31273069
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaacc 139  Q
    |||||||||| |||||||||||||||| | |||||| ||  ||||| || ||||| |   ||| |||||||||||||| ||||||||||||||||    
T  31273163 caacacactctttttgatttgttaaaatttacatggatcttaccaaatcatgtggattctatataaatttggtggatctcatgtgaattttaacc 31273069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 4103266 - 4103351
Alignment:
Q  297 ggttaggatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||| ||||||||||| ||| ||||||||| |||| | |||||||||| |||  ||||||  |||||||||||||||| ||||||    
T  4103266 ggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgcttttt 4103351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 42420011 - 42420128
Alignment:
Q  27 cattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-ca 125  Q
    |||||||||| |  ||| |||||||| ||  ||| ||| ||||||||  || ||||||||||||| || ||||| || |||| ||||||| |||||| ||    
T  42420011 cattctaacacacatttttcaacacattctctttaattggttaaaacatacgtgggtcccaccaaatcatgtggatcccatataaatttgatggatctca 42420110  T
Q  126 tgtgaattttaaccaatc 143  Q
    ||||| ||||||||||||    
T  42420111 tgtgagttttaaccaatc 42420128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 1716532 - 1716452
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaa-tagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||| ||| | | ||||||||||||||||||||||||    
T  1716532 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattacttttt 1716452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 36059355 - 36059235
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc 123  Q
    ||||||||||||| ||  ||  |||||||||   ||||||| ||||||| | |||||| ||||| ||| || ||||||||||||| ||||||| ||| ||    
T  36059355 acacattctaacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgatgggtc 36059256  T
Q  124 -catgtgaattttaaccaatc 143  Q
     ||||||||| |||| |||||    
T  36059255 tcatgtgaatcttaatcaatc 36059235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 3643667 - 3643746
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  || | | ||||||||||||||||||||||||    
T  3643667 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaattacttttt 3643746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 38029564 - 38029627
Alignment:
Q  57 ttttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg 120  Q
    |||||||| ||||||| ||||||||||| |||||| || ||||| ||||||| ||||| |||||    
T  38029564 ttttgattggttaaaattcacatgggtctcaccaaatcatgtggatctcatataaattgggtgg 38029627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 41169405 - 41169496
Alignment:
Q  48 acacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaac 138  Q
    ||||||||  ||||||| ||| ||| |||||||| | ||||||| || || | ||| |||| |||||||||||||| |||||||||||||||    
T  41169405 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaac 41169496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 22399884 - 22399798
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    ||||||| ||||||| ||||||| |||| || || || | |||||||||||  |||||||||| || ||||||||||||| ||||||    
T  22399884 tttgattggttaaaattcacatgagtcctactaaatcatctgggtctcatatgaatttggtgggtctcatgtgaattttatccaatc 22399798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 27195366 - 27195281
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg-atccatgtgaattttaaccaat 142  Q
    |||||||  |||||| ||||||| ||||||| || || ||| || | |||| ||||||||||| ||||||||||||||||| ||||    
T  27195366 tttgattgattaaaattcacatgagtcccacaaaatcatgtcggacccatataaatttggtggaatccatgtgaattttaatcaat 27195281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 40176019 - 40175923
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaat 142  Q
    ||||||||| |||| ||| ||||||| |||||||||||||||||| |  |||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  40176019 aacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtgaattttaaccaat 40175923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 34504521 - 34504405
Alignment:
Q  28 attctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtg-gatccat 126  Q
    |||||||||||   || ||||||||||  |||||||| ||||||| || |||||||| |||||| || |||||||| |||| |||||||||| | |||||    
T  34504521 attctaacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtgagttccat 34504422  T
Q  127 gtgaattttaaccaatc 143  Q
    |||||||||||||||||    
T  34504421 gtgaattttaaccaatc 34504405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 42072672 - 42072770
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaat 142  Q
    |||||||||||  ||||||| ||||| | |||||||||||||||||| || | ||||||||||| ||||||||||| | |||||| |||||||||||||    
T  42072672 tcaacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtgggtcccatgtaaattttaaccaat 42072770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 40696201 - 40696298
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaat 142  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||| || |||||||   ||| | ||||||||| || ||||| |||||||||||||    
T  40696201 caacacactctttttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggtcgcatgttaattttaaccaat 40696298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 40694740 - 40694641
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||| |||||| |||| ||| ||||||| |||||||||||||||||| || ||||||||  ||| | ||||||||| || ||||| ||||||||||||||    
T  40694740 tcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttggtgggtcgcatgttaattttaaccaatc 40694641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 41841232 - 41841153
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||| |||| | ||||||||||||||||||||||||    
T  41841232 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttt 41841153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 35586419 - 35586513
Alignment:
Q  48 acacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatcc-atgtgaattttaaccaat 142  Q
    ||||||||  ||||||| ||||||| ||||| || ||||||||| || |||| |||||||| ||||||||||| ||| ||||||||||||| ||||    
T  35586419 acacactctctttgattggttaaaattcacacgg-tcccaccaaatcatgtgagtctcatataaatttggtgggtcctatgtgaattttaatcaat 35586513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 44879010 - 44879089
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||| ||||| | ||||| ||||||||||||||||||    
T  44879010 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttt 44879089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 44880911 - 44880832
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||| ||||| | ||||| ||||||||||||||||||    
T  44880911 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttt 44880832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 2288613 - 2288710
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatcc-atgtgaattttaaccaatc 143  Q
    |||||||||  ||||||| ||||||| | ||||||||  |||||| ||   |||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  2288613 aacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttgatggatcccatgtgaattttaaccaatc 2288710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 26018573 - 26018490
Alignment:
Q  59 ttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatccatgtgaattttaaccaatc 143  Q
    |||||| ||||||| |||||||||||||| ||| |  |||||||| |||| ||||||||||| | |  |||||||||||||||||    
T  26018573 ttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtgggt-ctcgtgaattttaaccaatc 26018490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 38835035 - 38835111
Alignment:
Q  68 taaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgga-tccatgtgaattttaaccaatc 143  Q
    ||||| ||||||||||| |||||| || || ||||| |||| ||||||||| || || |||||||||||||||||||    
T  38835035 taaaattcacatgggtctcaccaaatcatgcgggtcccatataaatttggtagattctatgtgaattttaaccaatc 38835111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 10944479 - 10944348
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccacttt 401  Q
    ||||||||||| ||| ||||||||| |||| | ||||| |||| |||   ||| | |||||||||||||||||||||||| ||  |  |||  ||| |||    
T  10944479 gatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaattacttttttgatggggagaagccatttt 10944380  T
Q  402 agtagcttcctactaggtttcttatgtgtcac 433  Q
    |||||||| |||||||| |||||  |||||||    
T  10944379 agtagcttgctactaggcttcttgagtgtcac 10944348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 40054339 - 40054418
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||| ||||||||||||||||||||    
T  40054339 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaattacttttt 40054418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 8402592 - 8402506
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg-atccatgtgaattttaaccaatc 143  Q
    ||||||| |||||||||| |||||| |||||||| || |||||| | ||||  |||||| ||| | ||||||||||||||| |||||    
T  8402592 tttgattggttaaaactctcatgggccccaccaaatcatgtgggacccatattaatttgttgggacccatgtgaattttaaacaatc 8402506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 34504377 - 34504425
Alignment:
Q  33 aacatatgtttatcaacacactcattttgatttgttaaaactcacatgg 81  Q
    ||||||| ||| ||||||||||| |||||||| ||||||| ||||||||    
T  34504377 aacatatatttttcaacacactctttttgattggttaaaattcacatgg 34504425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 4237375 - 4237278
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||||  |||||||| ||||||| |||||||||| ||||||| || |||||||| |||| ||||||||||||| |||||| ||||||||||||||    
T  4237375 aacacactttttttgattagttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaatc 4237278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 2841097 - 2841018
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  2841097 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttt 2841018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 1469863 - 1469768
Alignment:
Q  48 acacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgga-tccatgtgaattttaaccaat 142  Q
    |||||||  |||| ||| ||||||| |||||||| |||||| || || |||||||| |||| |||||||||||| |||||||||||||||||||||    
T  1469863 acacacttttttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaat 1469768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 3466501 - 3466415
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    ||||||| ||||||| |||||||||| |||| || ||||||||||| ||||  |||||||||| || ||||||||||||||||||||    
T  3466501 tttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttggtgggtctcatgtgaattttaaccaatc 3466415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 42094329 - 42094233
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaa 141  Q
    ||||||||| |  ||||||| ||||||| |||||||| ||||||||| || |||||||| |||| ||||||||||| | |||||||||||||||||||    
T  42094329 tcaacacacactctttgattggttaaaattcacatgg-tcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaa 42094233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 37810269 - 37810174
Alignment:
Q  49 cacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    |||||||| ||||||| ||||||| |||||||||||||||||| |    |||||| |||| ||||||||||| | ||||||||||| |||||||||    
T  37810269 cacactcactttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtcccatgtgaattataaccaatc 37810174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 44247563 - 44247649
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatcc-atgtgaattttaaccaatc 143  Q
    ||||||| ||| ||| |||||||||| ||||||| |  |||||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  44247563 tttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttgatggatcccatgtgaattttaaccaatc 44247649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 25666946 - 25666826
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc 123  Q
    ||||||| |||||||   || |||||||||||  |||||| ||||||||  ||||||| ||||||||| || ||| |||  |||| ||||||||||| ||    
T  25666946 acacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccatataaatttggtgggtc 25666847  T
Q  124 -catgtgaattttaaccaatc 143  Q
     |||||||||||||| |||||    
T  25666846 tcatgtgaattttaatcaatc 25666826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 6471785 - 6471710
Alignment:
Q  307 aagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||| |||||||||||||||||| | ||||||||||| |||  ||| ||||||| |||||||| |||||||||    
T  6471785 aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttacttttt 6471710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 33069294 - 33069199
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaacc 139  Q
    ||||||||||| |||||||| ||||||| |||| |||||||||| || |  |||||||| |||| ||| ||||||| ||  |||||||||||||||    
T  33069294 tcaacacactctttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgggtctaatgtgaattttaacc 33069199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 42029354 - 42029452
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaat 142  Q
    ||||||||||   ||||||||||||||| ||| |||||||| ||||| || || ||  | |||| ||||||||||| || |||||||||||||||||||    
T  42029354 tcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaattttaaccaat 42029452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 18719724 - 18719814
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttg 116  Q
    ||||||||||||| || |||  |||||||||| |||||||| ||||||| ||||| | || ||||||| || |||||||| |||| |||||||    
T  18719724 acacattctaacacattttt--caacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtcccatataaatttg 18719814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 42251178 - 42251274
Alignment:
Q  48 acacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||||  ||||||  ||||||| || ||||||||||||||| |  |||||| |  ||| ||||||||||||| ||||||||||||||| |||||    
T  42251178 acacactctctttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtggatcccatgtgaattttaatcaatc 42251274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 10763958 - 10763879
Alignment:
Q  303 gatcaagtgtaatatatgttcttattag-ttgatatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||||||||||||| || || ||||||||||| ||| ||||| |  || || |||||||||||||||||    
T  10763958 gatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 30732035 - 30732114
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | ||||| |||| |||  |||| | ||||||||||||||||||||||||    
T  30732035 gatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttt 30732114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 30734015 - 30734094
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||| ||||||||||||||||||    
T  30734015 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttt 30734094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 32918107 - 32918186
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| |  |||||||||||||||||||||||    
T  32918107 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttt 32918186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 12779587 - 12779529
Alignment:
Q  86 caccaattcgtgtgggtctcatagaaatttggtggatcc-atgtgaattttaaccaatc 143  Q
    |||||| || |||||||| ||||  |||||||||||||| |||||||||||||||||||    
T  12779587 caccaaatcatgtgggtcacatatgaatttggtggatcccatgtgaattttaaccaatc 12779529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 17383853 - 17383789
Alignment:
Q  79 tgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaat 142  Q
    ||||||||||||| |  |||||||| |||||||||||||| ||| |||| ||| |||||||||||    
T  17383853 tgggtcccaccaaattatgtgggtcccatagaaatttggtgggacccatatgacttttaaccaat 17383789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 23317923 - 23318019
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaat 142  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||| || |||||||| |||| |||||| ||||||| |||||||||||||||||||    
T  23317923 aacacactccctttaatttgttaaaattcacataggtcccaccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaat 23318019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 38663642 - 38663761
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat- 122  Q
    ||||||| ||||| || ||| |||||||||||  ||||||| |||| || |||||| ||||||||||| || | ||||||  ||| ||||||||||| |     
T  38663642 acacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgggtc 38663741  T
Q  123 ccatgtgaattttaaccaat 142  Q
    ||||||||||||||||||||    
T  38663742 ccatgtgaattttaaccaat 38663761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 34437610 - 34437708
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatccatgtgaattttaaccaatc 143  Q
    |||||| ||||  ||||||| ||||||| |||||||||||||||||| || |||||| | |||| || || || ||| |||||||||||||||||||||    
T  34437610 tcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataatttggggggacccatgtgaattttaaccaatc 34437708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 11872561 - 11872482
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | ||| |||||| ||||||||| | ||||||||||||||||||||||||    
T  11872561 gatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattacttttt 11872482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 31970247 - 31970148
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaatc 143  Q
    ||||||||||| |||| |||  |||||  ||| |||||||||||||| || |||||||| |||| ||||||||| || || |||||||||||||||||||    
T  31970247 tcaacacactctttttaattgattaaatttcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggttcaatgtgaattttaaccaatc 31970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 14681626 - 14681747
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccacttt 401  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | |||||||||||||||||||||||| ||  |  |||  ||| |||    
T  14681626 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaagccatttt 14681725  T
Q  402 agtagcttcctactaggtttct 423  Q
    |||||||| |||||||| ||||    
T  14681726 agtagcttgctactaggcttct 14681747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 40668943 - 40669040
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg-atccatgtgaattttaaccaatc 143  Q
    |||||||||  ||||||| ||||||||||||||||||| ||| || |  |||||| | |||| ||||||||||| | || ||||||||||||||||||    
T  40668943 aacacactctctttgattggttaaaactcacatgggtctcacaaaattatgtgggacccatataaatttggtggaacccgtgtgaattttaaccaatc 40669040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 14654420 - 14654341
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||||||||||||||||||||||    
T  14654420 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 14654341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 14664211 - 14664132
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||||||||||||||||||||||    
T  14664211 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 14664132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 14669789 - 14669710
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||||||||||||||||||||||    
T  14669789 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 14669710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 14683777 - 14683856
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||||||||||||||||||||||    
T  14683777 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 14683856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 14706115 - 14706194
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||||||||||||||||||||||    
T  14706115 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 14706194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 14708605 - 14708684
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||||||||||||||||||||||    
T  14708605 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 14708684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 33988097 - 33988176
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||| |||||   ||||||||||||||||||||||||    
T  33988097 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattacttttt 33988176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 38175610 - 38175531
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| || | |||| | ||||||||||||||||||||||||    
T  38175610 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaattacttttt 38175531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 45563091 - 45563173
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaacc 139  Q
    ||||||| |||||||  ||||||| ||||||||| || ||| | ||||||| |||||||||||||| ||||| ||||||||||    
T  45563091 tttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttggtggatctcatgtaaattttaacc 45563173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 14652552 - 14652673
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccacttt 401  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| |  ||||||||||||||||||||||| ||  |  |||  ||| |||    
T  14652552 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggagaagccatttt 14652651  T
Q  402 agtagcttcctactaggtttct 423  Q
    |||||||| |||||||| ||||    
T  14652652 agtagcttgctactaggcttct 14652673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 14662343 - 14662464
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccacttt 401  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| |  ||||||||||||||||||||||| ||  |  |||  ||| |||    
T  14662343 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggagaagccatttt 14662442  T
Q  402 agtagcttcctactaggtttct 423  Q
    |||||||| |||||||| ||||    
T  14662443 agtagcttgctactaggcttct 14662464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 14674508 - 14674629
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattactttttcgaaagaaagataccacttt 401  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||| |||||||||||||||||| ||  |  |||  ||| |||    
T  14674508 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggagaagccatttt 14674607  T
Q  402 agtagcttcctactaggtttct 423  Q
    |||||||| |||||||| ||||    
T  14674608 agtagcttgctactaggcttct 14674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 14667191 - 14667111
Alignment:
Q  303 gatcaagtgtaatatatgttcttattag-ttgatatctgatatatggttcaatagatcacacgatattaaattactttttc 382  Q
    ||||||||||| ||| |||||||||||| || ||||||||||  |||  |||| | ||||| |||||||||||||||||||    
T  14667191 gatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaattactttttc 14667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 731445 - 731358
Alignment:
Q  57 ttttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||| ||| ||||||| | ||||| ||| |||||| || |||||||| |||| |||||||||| ||| |||||||||||||| |||||    
T  731445 tttttattggttaaaatttacatgagtcgcaccaaatcatgtgggtcccatataaatttggtgaatctcatgtgaattttaatcaatc 731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 14679886 - 14679965
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| |||  |||| | ||||| ||||||||||||||||||    
T  14679886 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttt 14679965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 14716318 - 14716397
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | ||||| |||| |||  |||| | ||||||||||||||||||||||||    
T  14716318 gatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttt 14716397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 2542816 - 2542730
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    ||||||| ||||||| |||||||| | ||||||| || |||||||  |||| |||||||||||  | ||||| ||||||||||||||    
T  2542816 tttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaatc 2542730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 36480821 - 36480735
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||| | ||||| |||||||||||||||||| || |||||||| |||| ||||||| ||| | |||||||||||||||||||||    
T  36480821 tttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttgttgggtcccatgtgaattttaaccaatc 36480735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 29955050 - 29955149
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||||||  |||||||| ||||||| |||||||||||||| ||| || |||||||| || | ||||||| ||||| |||| ||||||||||| ||||    
T  29955050 tcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaattttaactaatc 29955149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 30004204 - 30004303
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||||||  |||||||| ||||||| |||||||||||||| ||| || |||||||| || | ||||||| ||||| |||| ||||||||||| ||||    
T  30004204 tcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaattttaactaatc 30004303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 14345277 - 14345179
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||||||||| | || ||| ||||||| |||||||  ||||||||| || |||||||| |||| ||||||||||| || |||||| |||||||||||||    
T  14345277 caacacactcttctttattcgttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatc 14345179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 35357441 - 35357345
Alignment:
Q  48 acacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    ||||||||  ||||||| ||||||| |||||||||||| ||||| || |||  ||| |||| ||||||||||| || ||||||| ||||||||||||    
T  35357441 acacactctctttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtggttcacatgtgagttttaaccaatc 35357345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 35527182 - 35527126
Alignment:
Q  47 aacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtc 103  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||| || ||||||||    
T  35527182 aacacactcatttttatttgttaaaattcacatggatcccaccaaatcatgtgggtc 35527126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 37341248 - 37341334
Alignment:
Q  57 ttttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaatc 143  Q
    |||||||| ||||||| |||||||||| ||||||| || ||||||||||||| ||||||  | || | ||||||||||||||||||||    
T  37341248 ttttgattagttaaaattcacatgggt-ccaccaaatcatgtgggtctcatataaatttaatgggttacatgtgaattttaaccaatc 37341334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 45332640 - 45332573
Alignment:
Q  76 acatgggtcccaccaattcgtgtgggtctcatagaaatttggtgga-tccatgtgaattttaaccaat 142  Q
    |||||||||  ||||| || |||||||| |||| |||||||||||| |||||||||||||||||||||    
T  45332640 acatgggtctgaccaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaat 45332573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 19158683 - 19158769
Alignment:
Q  57 ttttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatccatgtgaattttaaccaatc 143  Q
    |||||||| ||||||| ||||||| ||||||| || |  ||||||| ||||| ||||||||||| | ||| ||||||||||| ||||    
T  19158683 ttttgattggttaaaattcacatgagtcccactaaattatgtgggtttcatataaatttggtgggttcatatgaattttaactaatc 19158769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 31205382 - 31205480
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    ||||||||||  ||||||| ||||||| | |||||||||  ||||| || |||||||| |||| ||| ||||||| || |||||||||||| |||||||    
T  31205382 caacacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgggtctcatgtgaattttgaccaatc 31205480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 35357308 - 35357364
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatg 80  Q
    ||||||||||||| || ||| |||||||||||  ||||||| |||||||||||||||    
T  35357308 acacattctaacaaatatttttcaacacactctctttgattggttaaaactcacatg 35357364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 51541393 - 51541273
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc 123  Q
    |||| |||||||| || ||| |||| |||||  |||||||| ||||||| ||| ||| |||||||||| || ||||||||  ||| |  |||||||| ||    
T  51541393 acaccttctaacacatatttttcaatacactttttttgattggttaaaattcagatgagtcccaccaaatcatgtgggtcctatatacttttggtgggtc 51541294  T
Q  124 -catgtgaattttaaccaatc 143  Q
     ||||||| ||||||||||||    
T  51541293 acatgtgagttttaaccaatc 51541273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 19560641 - 19560720
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatcc 124  Q
    |||| ||||||  ||||||| ||| ||| ||| |||||||||||||| || |||||||| |||| |||||| ||||||||    
T  19560641 tcaatacactcgctttgattggttgaaattcatatgggtcccaccaaatcatgtgggtcccatacaaatttagtggatcc 19560720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 49750614 - 49750713
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaatc 143  Q
    |||||||| ||  |||||||  |||||| |||||||| | |||| || ||||||| | ||| || ||||||||| |||||||||||||||||||| ||||    
T  49750614 tcaacacattctctttgattgattaaaattcacatggattccactaaatcgtgtgagcctcgtataaatttggtaggatccatgtgaattttaactaatc 49750713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 3901620 - 3901574
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaa 91  Q
    |||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  3901620 tcaacacactctctttgattggttaaaattcacatgggtcccaccaa 3901574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 40763495 - 40763397
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaat 142  Q
    |||||| ||||  ||| |||| |||||| |||| || || ||||||| || ||||| || |||| ||||||| |||||| |||||||||||||||||||    
T  40763495 tcaacatactctctttaatttattaaaattcacctgagttccaccaaatcatgtggatcccatataaatttgatggatctcatgtgaattttaaccaat 40763397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 40554072 - 40554149
Alignment:
Q  67 ttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||||| |||||||||||||||||| || |||| | | |||| ||||||| |||| | ||||||| ||||||||||||    
T  40554072 ttaaaattcacatgggtcccaccaaatcatgtgagacccatataaatttgatggaactcatgtgagttttaaccaatc 40554149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 32881023 - 32881107
Alignment:
Q  59 ttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaat 142  Q
    |||||| ||||| | ||||||||||||||| || || ||||| || |||| ||||||||||| || | ||| |||||||||||||    
T  32881023 ttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgggtctcgtgtaaattttaaccaat 32881107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 12275864 - 12275767
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaat 142  Q
    ||||||||||  || |||| ||||||| ||| |||||||||||||| || |||||||| |||| ||||||||||| | |||||||| |||||||||||    
T  12275864 caacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgatttttaaccaat 12275767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 26863019 - 26862941
Alignment:
Q  66 gttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||| |||||||||||||||||| || ||||||||  ||| |||| ||||| || |||||||||||||||||||||    
T  26863019 gttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatggtgaatcccatgtgaattttaaccaatc 26862941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 7526233 - 7526146
Alignment:
Q  57 ttttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaatc 143  Q
    |||||||| ||||||| | ||||| ||| |||||| || ||  ||||||||| ||||||||| |||||||||||||||||||| ||||    
T  7526233 ttttgattggttaaaatttacatgtgtctcaccaaatcatgctggtctcatataaatttggtgggatccatgtgaattttaacaaatc 7526146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 49107032 - 49106934
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaatc 143  Q
    |||||||||||  ||||||| ||||||| |||||| ||||||||||| || || ||| | |||| ||||||||| ||| ||||||||||||||| |||||    
T  49107032 tcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcgggac-catataaatttggtaggacccatgtgaattttaatcaatc 49106934  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 2276383 - 2276305
Alignment:
Q  66 gttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg-atccatgtgaattttaaccaatc 143  Q
    ||||||| |||||||  ||||||||| |  |||||||| | || ||||||||||| |||||||||||||||||||||||    
T  2276383 gttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccatgtgaattttaaccaatc 2276305  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 3235685 - 3235587
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||||||||| |||||||| ||||||| |||||||||||| ||| |    |||||||| |||  ||||||| ||| || ||||||||||||||||||||    
T  3235685 caacacactctttttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggtctcatgtgaattttaaccaatc 3235587  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 11201306 - 11201376
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttg 116  Q
    ||||||||||  ||| ||| ||||||| |||||||||||||||||| ||  |||||||||||| |||||||    
T  11201306 caacacactctctttcattagttaaaattcacatgggtcccaccaaatcacgtgggtctcatataaatttg 11201376  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 24516581 - 24516667
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaatc 143  Q
    ||||||| ||||||| |||||||||||||||||| || ||||| |  |||  |||||| |||||| ||||||||||||||| |||||    
T  24516581 tttgattggttaaaattcacatgggtcccaccaaatcatgtggattccatctaaatttagtggatcccatgtgaattttaatcaatc 24516667  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 7526133 - 7526176
Alignment:
Q  48 acacactcattttgatttgttaaaactcacatgggtcccaccaa 91  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||    
T  7526133 acacactcactttgatttgttaaaattcacatggatcccaccaa 7526176  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 10056750 - 10056651
Alignment:
Q  45 tcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggatccatgtgaattttaaccaatc 143  Q
    |||||||||||  ||| ||| |||||||  || ||||||||| |||| || |||||||| |||| ||| ||||| || |||||||||||||| |||||||    
T  10056750 tcaacacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtcccatataaaattggtgggttccatgtgaattttgaccaatc 10056651  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 40134498 - 40134440
Alignment:
Q  60 tgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt 118  Q
    ||||| ||||||| |||||||||||||||||| |  |||||||| |||| |||||||||    
T  40134498 tgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggt 40134440  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 47497814 - 47497752
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg 120  Q
    ||||||| ||||||| ||||||| |||||||||| |  |||||||| |||| |||||||||||    
T  47497814 tttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccatacaaatttggtgg 47497752  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 316434 - 316389
Alignment:
Q  97 gtgggtctcatagaaatttggtggatc-catgtgaattttaaccaa 141  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||    
T  316434 gtgggtctcatacaaatttggtggaactcatgtgaattttaaccaa 316389  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 18802866 - 18802950
Alignment:
Q  59 ttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaaccaat 142  Q
    |||||||||||||| |||||| ||||||||||| |  ||| |||  |||| |||||| | |||| |||| |||||||||||||||    
T  18802866 ttgatttgttaaaattcacataggtcccaccaaataatgttggttccatataaatttcgcggatcccatatgaattttaaccaat 18802950  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 11333266 - 11333336
Alignment:
Q  312 taatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    |||||||||||||||| |||| | |||||||||| |||| |||  ||||||||||||||||||||||||||    
T  11333266 taatatatgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttt 11333336  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 8875716 - 8875789
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaatta 375  Q
    ||||||||||||||| ||||||||| | || | |||||||||| |||| |||||||| ||||||||||||||||    
T  8875716 gatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaatta 8875789  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 6643429 - 6643343
Alignment:
Q  58 tttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtgg-atccatgtgaattttaaccaatc 143  Q
    ||||||| ||||||| ||| || ||||||||||| || |||||||| |||| |||||||||||   | |||||||||||||||||||    
T  6643429 tttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtggtcactatgtgaattttaaccaatc 6643343  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 12731680 - 12731582
Alignment:
Q  46 caacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatc-catgtgaattttaaccaatc 143  Q
    |||||||||| |||||||| ||||||| | |||| | | ||||||| || |||||||| || | ||||||| ||| || ||||||||||||||||||||    
T  12731680 caacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtcccaaataaatttgatgggtctcatgtgaattttaaccaatc 12731582  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 10791732 - 10791653
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| || | |||| | ||||| ||||||||||||||||||    
T  10791732 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattacttttt 10791653  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 10795970 - 10795891
Alignment:
Q  303 gatcaagtgtaatatatgttcttattagttga-tatctgatatatggttcaatagatcacacgatattaaattacttttt 381  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||| ||   |||| | ||||||||||||||||||||||||    
T  10795970 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattacttttt 10795891  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 11650916 - 11650994
Alignment:
Q  60 tgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggat-ccatgtgaattttaa 137  Q
    ||||| ||||||| |||||||| ||||||||| |  |||||||| |||| ||||||||||| | |||||| ||||||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtcccatgtaaattttaa 11650994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 28865434 - 28865480
Alignment:
Q  57 ttttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtc 103  Q
    |||| ||| ||||||| ||||||||||||||||||||| ||||||||    
T  28865434 tttttattggttaaaattcacatgggtcccaccaattcatgtgggtc 28865480  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 136469 - 136349
Alignment:
Q  24 acacattctaacatatgtttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggt-ggat 122  Q
    ||||||| ||||| |  ||| ||||||||||| |||||||| ||||||||||||||| |||||| ||| || |||| | | |||| ||||||| | |||     
T  136469 acacattttaacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttgatgggac 136370  T
Q  123 ccatgtgaattttaaccaatc 143  Q
     ||| ||||||||||||||||    
T  136369 tcatatgaattttaaccaatc 136349  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 201087 - 200987
Alignment:
Q  42 ttatcaacacactcattttgatttgttaaaactcacatgggtcccaccaattcgtgtgggtctcatagaaatttggtggatcc-atgtgaattttaacca 140  Q
    ||||||||||||||  ||||||||||||| | ||||||| ||||||| || ||  ||||||||  ||  |||||||||| ||| ||||||||||||||||    
T  201087 ttatcaacacactctctttgatttgttaagattcacatgtgtcccactaaatcaggtgggtct-gtatgaatttggtgggtccaatgtgaattttaacca 200989  T
Q  141 at 142  Q
    ||    
T  200988 at 200987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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