View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7534_low_2 (Length: 401)
Name: NF7534_low_2
Description: NF7534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7534_low_2 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 6 - 386
Target Start/End: Original strand, 37100088 - 37100468
Alignment:
| Q |
6 |
gatggacatcactgtaataatgagtaggagaatgagcccaatgaaagaggctattaaggaaccaccacctctattgcaataggactcaaatttgtcacat |
105 |
Q |
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| T |
37100088 |
gatggacatcactgtaataatgagtaggagaatgagcccaatgaaagaggctattaaggaaccaccacctctattgcaataggactcaaatttgtcacat |
37100187 |
T |
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| Q |
106 |
attttattccattttgcatgtgaattaccattccttcctaattctgacatagctgttgctgcaccatctccactttatgctagagccaaagccatctaat |
205 |
Q |
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| T |
37100188 |
attttattccattttgcatgtgaattaccattccttcctaattctgacatagctgttgctgcaccatctccacttgatgctagagccaaagccatctaat |
37100287 |
T |
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| Q |
206 |
tcacccaattaatcnnnnnnncataatcaatcagttctcatatgttagtaattttaatttaaatgatcaattagaggtgtggagcactactaaaaaatgt |
305 |
Q |
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| T |
37100288 |
tcacccaattaatcaaaaaaatataatcaatcagttctcatatgttagtaattttaatttaaatgatcaattagaggtgaggagcactactaaaaaatgt |
37100387 |
T |
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| Q |
306 |
atcatttattttgtaccgtgtcaaatactgcaatcagtgcaagttggagtcctttgttatgaaatttgggtcctaatatat |
386 |
Q |
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| T |
37100388 |
atcatttattttgtaccgtgtcaaatactgcaatcagtgcaagttggagtcctttgttatgaaatttgggtcctaatatat |
37100468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 38129 - 38272
Alignment:
| Q |
34 |
agaatgagcccaatgaaagaggctattaaggaaccaccacctctattgcaataggactcaaatttgtcacatattttattccattttgcatgtgaattac |
133 |
Q |
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| T |
38129 |
agaatgaagccaatgaaagaagcaataagggcaccaccacctctgttgcaatagctttcaaatttgtcacaaatcttatcccatcttgcatgtgaattac |
38228 |
T |
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| Q |
134 |
cattccttcctaattctgacatagctgttgctgcaccatctcca |
177 |
Q |
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| T |
38229 |
catttcttcccaatgctgacatgaatgttgctgcaccatctcca |
38272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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