View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7534_low_6 (Length: 219)
Name: NF7534_low_6
Description: NF7534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7534_low_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 12821606 - 12821431
Alignment:
| Q |
37 |
ccctctaatttttccctccattaatatgcctgttttgaaattcaaatttctattgttatgtttttctgatattttgcttgaaaatagtaaaggtgatgtg |
136 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
12821606 |
ccctctaattttttcctccactaatatgtctgttttgaaattgaaatttctattgttatgttttcctgattttttgcttgaaaatagtaaacgtgatgtg |
12821507 |
T |
|
| Q |
137 |
tatgtgatcatttgcatttaatacgacctttcccatatcctatggagactaattcagcttcccacttctccatatt |
212 |
Q |
| |
|
||||| ||||||| ||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
12821506 |
tatgttgtcatttgtatttaatacaacatttcccatatcctatgcagactaatacagcttcccacttctccatatt |
12821431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 12827248 - 12827073
Alignment:
| Q |
37 |
ccctctaatttttccctccattaatatgcctgttttgaaattcaaatttctattgttatgtttttctgatattttgcttgaaaatagtaaaggtgatgtg |
136 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
12827248 |
ccctctaattttttcctccactaatatgtctgttttgaaattgaaatttctattgttatgttttcctgattttttgcttgaaaatagtaaacgtgatgtg |
12827149 |
T |
|
| Q |
137 |
tatgtgatcatttgcatttaatacgacctttcccatatcctatggagactaattcagcttcccacttctccatatt |
212 |
Q |
| |
|
||||| ||||||| ||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
12827148 |
tatgttgtcatttgtatttaatacaacatttcccatatcctatgcagactaatacagcttcccacttctccatatt |
12827073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12821681 - 12821637
Alignment:
| Q |
1 |
gcttattaggtcatgctataagttaacctagattttccctctaatt |
46 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
12821681 |
gcttattaggt-atgttataagttaacctagattttccctctaatt |
12821637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12827323 - 12827279
Alignment:
| Q |
1 |
gcttattaggtcatgctataagttaacctagattttccctctaatt |
46 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
12827323 |
gcttattaggt-atgttataagttaacctagattttccctctaatt |
12827279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 38506045 - 38506226
Alignment:
| Q |
37 |
ccctctaatttttccctccattaatatgcctgttttgaaattcaaatttctattgttatgtttttctgatattttgcttgaaaatagtaaaggtgatgtg |
136 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||| ||| ||||| || |
|
|
| T |
38506045 |
ccctccaatttttccctccattattatgcctgttttgaaattcaaatgactattgtt-tgtttccctgattttttgcttgaaaatagaaaatgtgatatg |
38506143 |
T |
|
| Q |
137 |
tatgtgatcatttgcatttaatacgacctttcccatatcctatggagactaattcagcttcccacttctccatattgtttctg |
219 |
Q |
| |
|
|| ||| ||||||| |||||||| ||||||| ||| |||||||| ||| | | | |||| ||||||||||||||||||||||| |
|
|
| T |
38506144 |
tacgtggtcatttgtatttaatatgaccttttccaaatcctatgcagaattaataagctacccacttctccatattgtttctg |
38506226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38505969 - 38506013
Alignment:
| Q |
1 |
gcttattaggtcatgctataagttaacctagattttccctctaat |
45 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
38505969 |
gcttattaggtcatgctaccacttaacctaaattttccctctaat |
38506013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4814740 - 4814785
Alignment:
| Q |
1 |
gcttattaggtcatgctataagttaacctagattttccctctaatt |
46 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4814740 |
gcttattaggtcatgctattagttaacctaatttttccctctaatt |
4814785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 16965233 - 16965289
Alignment:
| Q |
37 |
ccctctaatttttccctccattaatatgcctgttttgaaattcaaatttctattgtt |
93 |
Q |
| |
|
||||| |||||||||||||| | |||||||| |||||||||||||| | ||||||| |
|
|
| T |
16965233 |
ccctccaatttttccctccactgttatgcctgatttgaaattcaaatgtgtattgtt |
16965289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University