View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7535_high_1 (Length: 460)
Name: NF7535_high_1
Description: NF7535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7535_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 316 - 444
Target Start/End: Complemental strand, 19135650 - 19135522
Alignment:
| Q |
316 |
tttaacaatccaagttatcatgcacaactaaaaagtaatcaatctcttaatcctcctccagttcaacaaaacctcccacacatgaatcattttcctttgt |
415 |
Q |
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| T |
19135650 |
tttaacaatccaagttatcatgcccaactagaaagtaatcaatctcttaatcctcctcaatttcaacaaaacctcccacacatgaatcattttcctttgt |
19135551 |
T |
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| Q |
416 |
tcttgcatcaatttattgaagatgtcgtg |
444 |
Q |
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| T |
19135550 |
tcttgcatcaatttattgaagatgtcgtg |
19135522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 19135884 - 19135766
Alignment:
| Q |
20 |
ccatcaacgtagaatcttacatgcctagtagagacaacttttgtatttgatgatttggggtatgcattagtgattcaatgttgtctttcaatttatttat |
119 |
Q |
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| T |
19135884 |
ccatcaacatagaatcttacatgtctagtagagacaacttttgtatttgataatttggggtatgcatttgtgattcaatgttgtctttcaatgtatttat |
19135785 |
T |
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| Q |
120 |
caaggctaaatgttgttct |
138 |
Q |
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| T |
19135784 |
caaggctaaatgttgttct |
19135766 |
T |
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