View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7535_low_3 (Length: 296)
Name: NF7535_low_3
Description: NF7535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7535_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 9303518 - 9303418
Alignment:
| Q |
190 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacaacatcaccaaaaccagtcaaccaaccacacaaagcaataacaccaa |
289 |
Q |
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| T |
9303518 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacatcaccaccaaaaccagtcaaccaaccacacaaagcaataacatcaa |
9303419 |
T |
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| Q |
290 |
a |
290 |
Q |
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| T |
9303418 |
a |
9303418 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9303696 - 9303619
Alignment:
| Q |
1 |
aaaaacacaaggaaagctgccaaattttgcatcaacc-taattccaaaccttgtctgataccatcataaaccagtaat |
77 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9303696 |
aaaaacacaaggaaagctgccaaattttgcatcaaccctaattccaaaccttgtctgataccatcataaaccagtaat |
9303619 |
T |
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