View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7537_low_1 (Length: 413)
Name: NF7537_low_1
Description: NF7537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7537_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 27629608 - 27630014
Alignment:
| Q |
18 |
ttgtttatatcctaaatcagtgattatt---gagcccctaaccacatgaaaatgaaatatacttgatacttccacacgtccatcatatagacacaaaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27629608 |
ttgtttatatcctaaatcagtgattattattgaacccctaaccacatgaaaatgaaatatacttgatacttccactcgtccatcatatagacacaaaatt |
27629707 |
T |
|
| Q |
115 |
actacatcgtcat------tcaatatacaatagtgcaagacctgatggtaacaattgcctaagaaacataatcatcacataat----ggaccttagctca |
204 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27629708 |
actacatcgtcatcgtcattcaatacacaatagtgcaagacctgatggtaacaattgcctaagaaacataatcatcacataattaatggaccttagctca |
27629807 |
T |
|
| Q |
205 |
ataacctaccaaaatgaaagatcaaatcttatcagatatgaataaattaattaatgactttgaaaattcaaactactacacagcagtggttaggacatgc |
304 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27629808 |
ataacctaccaaaaggaaagatcaaatcttatcatatatgaataaatt----aatgactttgaaaattcaaactactacacagcagtggttaggacatgc |
27629903 |
T |
|
| Q |
305 |
atgtgaaggaaggcccacttat----------aaaaactaatcatatctttttgattgattagtgatgaaatctggataagtttaattgaaaaagaagga |
394 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27629904 |
atgtgaaggaaggcccacttatatataattaaaaaaactaatgatatctttttgattgattagtgatgaaatctggataagtttaattgaaaaagaagga |
27630003 |
T |
|
| Q |
395 |
atggaacacca |
405 |
Q |
| |
|
||||||||||| |
|
|
| T |
27630004 |
atggaacacca |
27630014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University