View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7537_low_2 (Length: 254)

Name: NF7537_low_2
Description: NF7537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7537_low_2
NF7537_low_2
[»] chr5 (4 HSPs)
chr5 (1-245)||(21925355-21925599)
chr5 (51-146)||(15547916-15548011)
chr5 (11-145)||(31314831-31314964)
chr5 (143-197)||(31364859-31364913)
[»] chr4 (1 HSPs)
chr4 (16-207)||(8676535-8676726)
[»] chr2 (1 HSPs)
chr2 (1-198)||(15479624-15479821)
[»] chr1 (2 HSPs)
chr1 (1-189)||(41102167-41102338)
chr1 (19-104)||(23969209-23969295)
[»] chr7 (1 HSPs)
chr7 (19-104)||(13575999-13576085)
[»] chr3 (1 HSPs)
chr3 (50-184)||(33238878-33239012)
[»] chr8 (1 HSPs)
chr8 (139-184)||(39578372-39578417)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 21925355 - 21925599
Alignment:
Q  1 catgtcctggaaaaatagttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21925355 catgtcctggaaaaatagttggttgcaatcccgtttccgaggcaatttccgaggaacttttgtttccgaggaagaatgtcctcggaatattgatttgaca 21925454  T
Q  101 actgagccacaaactggcgcggctgtaaaggctgacactaaagtgactagattttccgaggaactttgtcctcagaatgtattttattttaaaaaataat 200  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  21925455 actgagccatagattggcgcggctgtaaaggctgacactaaagtgactagattttccgaggaactttgtcctcggaatgtattttattttaaaaaatgat 21925554  T
Q  201 taaattttggactgctagatagtaggaattattgtccacaggttc 245  Q
    |||||||||||| |||||||||||||||||||||||||| |||||    
T  21925555 taaattttggaccgctagatagtaggaattattgtccactggttc 21925599  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 15547916 - 15548011
Alignment:
Q  51 gaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgacaactgagccacaaactggcgcggctgtaaaggctgacactaaagtga 146  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||| |||| ||||| |||| ||   ||| ||||| |||||| |||||||    
T  15547916 gaggaactgttgtttcggaggaagaatgtcctcgaaataatgatttgacagctgaaccacatactgacgtatctgcaaaggttgacacaaaagtga 15548011  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 31314831 - 31314964
Alignment:
Q  11 aaaaatagttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgacaactgagccac 110  Q
    ||||||||||||||||||  || ||||||||| | ||||||||||| | |||||||| | |||  ||||||||  |||   ||||||||| ||||| |||    
T  31314831 aaaaatagttggttgcaaatccatttccgaggaatttttcgaggaaatgttgtttccaaagaaacatgtcctcagaatgaggatttgacagctgag-cac 31314929  T
Q  111 aaactggcgcggctgtaaaggctgacactaaagtg 145  Q
    | | ||||||  |||| | ||||||||| ||||||    
T  31314930 atattggcgcatctgtgatggctgacacgaaagtg 31314964  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 31364859 - 31364913
Alignment:
Q  143 gtgactagattttccgaggaactttgtcctcagaatgtattttattttaaaaaat 197  Q
    ||||||||  |||||||||||||||||| |  ||||||||||||||| |||||||    
T  31364859 gtgactagggtttccgaggaactttgtcattggaatgtattttatttaaaaaaat 31364913  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 8676726 - 8676535
Alignment:
Q  16 tagttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgacaactgagccacaaact 115  Q
    |||| |||||||||||| || | |||| |||||| |||||||||||||||| |||||||||||||||   |||| |||||||||| ||||||| || ||     
T  8676726 tagtgggttgcaatcccattacagaggaaatttttgaggaacttttgtttctgaggaagaatgtccttagaataatgatttgacagctgagcctcagacc 8676627  T
Q  116 ggcgcggctgtaaaggctgacactaaagtgactagattttccgaggaactttgtcctcagaatgtattttattttaaaaaataattaaattt 207  Q
    |  ||   ||||||| || |||||||||||| |||  ||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  8676626 gatgcatttgtaaagtctaacactaaagtgattagtgttttcgagaaactttgtcctcagaatgtattttattttaaaaaatagttatattt 8676535  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 15479624 - 15479821
Alignment:
Q  1 catgtcctggaaaaatagttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgaca 100  Q
    |||||||| ||||||||||| |||||| |||  || | |||| ||||||||| ||||||||||||| |||||| ||||||||   |||| ||||||||||    
T  15479624 catgtccttgaaaaatagtttgttgcagtcctattactgaggaaattttcgaagaacttttgtttcagaggaaaaatgtccttagaataatgatttgaca 15479723  T
Q  101 actgagccacaaactggcgcggctgtaaaggctgacactaaagtgactagattttccgaggaactttgtcctcagaatgtattttattttaaaaaata 198  Q
      ||  ||||| |||| |||  |||||||||||| || ||||||||||||  ||||||||||||||||||||  ||||||| || | || ||||||||    
T  15479724 gttgcaccacagactgacgcatctgtaaaggctgccaataaagtgactagtgtttccgaggaactttgtcctaggaatgtacttaagttaaaaaaata 15479821  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 41102338 - 41102167
Alignment:
Q  1 catgtcctggaaaaatagttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgaca 100  Q
    ||||||||||||||||||||||||||||||            |||||  ||||||||||||||||| |||||| |||||||||| |||| |||||||||     
T  41102338 catgtcctggaaaaatagttggttgcaatc------------caattaccgaggaacttttgtttctgaggaaaaatgtcctcggaataatgatttgac- 41102252  T
Q  101 actgagccacaaactggcgcggctgtaaaggctgacactaaagtgactagattttccgaggaactttgtcctcagaatgtattttattt 189  Q
        || | ||||||| | |   || ||||| || ||| |||||||||||  ||||||||||||||||||||| |||||||||| ||||    
T  41102251 ----agtcgcaaactgacacatttgaaaaggatgtcaccaaagtgactagcatttccgaggaactttgtcctcggaatgtatttaattt 41102167  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 23969295 - 23969209
Alignment:
Q  19 ttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaa-tgtcctcgaaatattgatttgacaactg 104  Q
    |||||| |||||| | |||||||| ||||| | ||||| |   |||||||||||| || ||||||||||||||||||||||||||||    
T  23969295 ttggttacaatccaggttccgaggaaatttccaaggaaataaagtttccgaggaacaaatgtcctcgaaatattgatttgacaactg 23969209  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 13576085 - 13575999
Alignment:
Q  19 ttggttgcaatcccgtttccgaggcaattttcgaggaacttttgtttccgaggaagaa-tgtcctcgaaatattgatttgacaactg 104  Q
    ||||||||||||| | |||||||| ||||| ||||||| |   |||||||||||| || |||||||| |||||||||||||||||||    
T  13576085 ttggttgcaatccaggttccgaggaaatttccgaggaaataacgtttccgaggaacaaatgtcctcggaatattgatttgacaactg 13575999  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 33238878 - 33239012
Alignment:
Q  50 cgaggaacttttgtttccgaggaagaatgtcctcgaaatattgatttgacaactgagccacaaactggcgcggctgtaaaggctgacactaaagtgacta 149  Q
    ||||||||||| ||||| ||| ||  ||||||||| |||| ||||||||||||||  ||||| | || | |  ||| ||| |||| ||||||||||||||    
T  33238878 cgaggaactttagtttctgagaaaatatgtcctcggaataatgatttgacaactgccccacagattgacacatctgcaaaagctgtcactaaagtgacta 33238977  T
Q  150 gattttccgaggaactttgtcctcagaatgtattt 184  Q
    |  |||||||  || |||||||||  |||||||||    
T  33238978 gcgtttccgaaaaattttgtcctcgaaatgtattt 33239012  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 39578417 - 39578372
Alignment:
Q  139 taaagtgactagattttccgaggaactttgtcctcagaatgtattt 184  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||    
T  39578417 taaagtgactagcgtttccgaggaactttgtcctcggaatgtattt 39578372  T

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