View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7537_low_3 (Length: 240)
Name: NF7537_low_3
Description: NF7537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7537_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10486490 - 10486268
Alignment:
| Q |
1 |
tttaccatatactaaatatagtatttattttgtaattgatgccagggttcaccnnnnnnnaatatatagaactcattaacttcaagtgaactttctgtaa |
100 |
Q |
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| T |
10486490 |
tttaccatatactaaatatagtatttattttgtaattggtgccagggttcaccttattttaatatagaaaactcattaacttcaagttaactttctgtaa |
10486391 |
T |
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| Q |
101 |
catgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatccc |
200 |
Q |
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| T |
10486390 |
catgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatccc |
10486291 |
T |
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| Q |
201 |
atattattctagtagatggactt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
10486290 |
atattattctagtagatggactt |
10486268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 10500857 - 10500712
Alignment:
| Q |
76 |
ttaacttcaagtga--actttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattag |
173 |
Q |
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|||||||||||||| ||||| |||||||||||||||| || ||||| |||||||| || ||||||||| ||||||||||||||||||||||||| |||| |
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| T |
10500857 |
ttaacttcaagtgatcactttttgtaacatgccctattgagtggaataggaggatccgtaaaagctccattagagatttgatcaaagacaatcttgttag |
10500758 |
T |
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| Q |
174 |
ctgcctctgtgtaatgggttccatcccatattattctagtagatgg |
219 |
Q |
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| T |
10500757 |
ctgcctctgtgtaatgagtaccatcccatattattctagttgatgg |
10500712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 10503902 - 10503783
Alignment:
| Q |
100 |
acatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcc |
199 |
Q |
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||||||||||||||||| ||| |||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||| |||||| | |||| |||||| |
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| T |
10503902 |
acatgccctatttagagaaataggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcttctgtgaagtgggaaccatcc |
10503803 |
T |
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| Q |
200 |
catattattctagtagatgg |
219 |
Q |
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|| || |||||||||||||| |
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| T |
10503802 |
caaatgattctagtagatgg |
10503783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 10509337 - 10509191
Alignment:
| Q |
76 |
ttaacttcaagtga--actttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattag |
173 |
Q |
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||||||| |||||| ||||||| ||||||||||||| ||||| ||| |||||||| ||||| |||||||| ||||||| ||||||||||| |||| |
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| T |
10509337 |
ttaacttgaagtgatcactttctataacatgccctatctagagaaataggaggatcattgaaaactccagtaaggatttgagaaaagacaatctcgttag |
10509238 |
T |
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| Q |
174 |
ctgcctctgtgtaatgggttccatcccatattattctagtagatgga |
220 |
Q |
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|||| ||||||||||| ||||||||||| |||||||| |||||| |
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| T |
10509237 |
ctgcttctgtgtaatgaacaccatcccatatgattctagttgatgga |
10509191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 10544986 - 10545071
Alignment:
| Q |
116 |
ggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatccca |
201 |
Q |
| |
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|||||||||||||||| |||||| |||||||| ||||||||||||| || || |||||||| || ||||| || |||||||||| |
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| T |
10544986 |
ggaatgggaggatctgagaaagccccagtagaaatttgatcaaagataaatttgttagctgcttcagtgtagtgaattccatccca |
10545071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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