View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7539_high_15 (Length: 279)

Name: NF7539_high_15
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7539_high_15
NF7539_high_15
[»] chr1 (5 HSPs)
chr1 (1-138)||(38137294-38137431)
chr1 (218-261)||(38137171-38137214)
chr1 (75-104)||(48033964-48033993)
chr1 (76-104)||(4551129-4551157)
chr1 (76-104)||(32512133-32512161)
[»] chr7 (1 HSPs)
chr7 (75-104)||(44207699-44207728)
[»] chr6 (1 HSPs)
chr6 (76-104)||(6614896-6614924)
[»] chr5 (1 HSPs)
chr5 (76-104)||(11680227-11680255)
[»] chr4 (1 HSPs)
chr4 (76-104)||(2804411-2804439)
[»] chr3 (1 HSPs)
chr3 (76-104)||(46055790-46055818)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38137431 - 38137294
Alignment:
Q  1 attcaacacaaaaaacaagttataagtaaaataaatgtttttcaacagtactacaataaaggaaaaacaacaattttttccaacacaaaatttctatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38137431 attcaacacaaaaaacaagttataagtaaaataaatgtttttcaacagtactacaataaaggaaaaacaacaattttttccaacacaatatttctatttt 38137332  T
Q  101 tgtttccctaaaataaatatactatactaacaacaagt 138  Q
     |||||||||||||||||||||||||||||||||||||    
T  38137331 cgtttccctaaaataaatatactatactaacaacaagt 38137294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 38137214 - 38137171
Alignment:
Q  218 tagtatctaacgattttatgtaacgaaataagtacactaagtgt 261  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  38137214 tagtatctaacgattttatgtaaccaaataagtacactaagtgt 38137171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 48033964 - 48033993
Alignment:
Q  75 tttttccaacacaaaatttctatttttgtt 104  Q
    ||||||||||||||||||||||||||||||    
T  48033964 tttttccaacacaaaatttctatttttgtt 48033993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 4551129 - 4551157
Alignment:
Q  76 ttttccaacacaaaatttctatttttgtt 104  Q
    |||||||||||||||||||||||||||||    
T  4551129 ttttccaacacaaaatttctatttttgtt 4551157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 32512133 - 32512161
Alignment:
Q  76 ttttccaacacaaaatttctatttttgtt 104  Q
    |||||||||||||||||||||||||||||    
T  32512133 ttttccaacacaaaatttctatttttgtt 32512161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 44207699 - 44207728
Alignment:
Q  75 tttttccaacacaaaatttctatttttgtt 104  Q
    ||||||||||||||||||||||||||||||    
T  44207699 tttttccaacacaaaatttctatttttgtt 44207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 6614924 - 6614896
Alignment:
Q  76 ttttccaacacaaaatttctatttttgtt 104  Q
    |||||||||||||||||||||||||||||    
T  6614924 ttttccaacacaaaatttctatttttgtt 6614896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 11680255 - 11680227
Alignment:
Q  76 ttttccaacacaaaatttctatttttgtt 104  Q
    |||||||||||||||||||||||||||||    
T  11680255 ttttccaacacaaaatttctatttttgtt 11680227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 2804411 - 2804439
Alignment:
Q  76 ttttccaacacaaaatttctatttttgtt 104  Q
    |||||||||||||||||||||||||||||    
T  2804411 ttttccaacacaaaatttctatttttgtt 2804439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 46055818 - 46055790
Alignment:
Q  76 ttttccaacacaaaatttctatttttgtt 104  Q
    |||||||||||||||||||||||||||||    
T  46055818 ttttccaacacaaaatttctatttttgtt 46055790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University