View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7539_high_16 (Length: 271)
Name: NF7539_high_16
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 42837967 - 42838219
Alignment:
| Q |
1 |
gctaaggagcttttaaaaattattcagactccaagcataagggaggctgctgtagctgccaagttcaaaactaaaggtggttctcagatgagaccatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42837967 |
gctaaggagcttttaaaaattattcagactccaagcataagggaggctgctgtagctgccaagttcaaaactaaaggtggttctcagatgagaccatatt |
42838066 |
T |
|
| Q |
101 |
gtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataagcttcattttagacgaatcattgctcttcatactgacat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42838067 |
gtgacttaccaacaaaagaagactgtcgacgccggactggttcctttatagcatgtaataagcttcattttagacgaatcattgctcttcatactgacat |
42838166 |
T |
|
| Q |
201 |
taatttgggagactgtccttttcttcgtacttgccggcacatgaacacatgta |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42838167 |
taatttgggagactgtccttttcttcgtacttgccggcacatgaacacatgta |
42838219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 43913848 - 43913748
Alignment:
| Q |
62 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
161 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |
|
|
| T |
43913848 |
agttcaaaactaaaggtggttctcaggtgaaacaatattgtgacttactgacaaaagaagattgtcggcgccagaccggttcctttgtagcatgtaataa |
43913749 |
T |
|
| Q |
162 |
g |
162 |
Q |
| |
|
| |
|
|
| T |
43913748 |
g |
43913748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 43913552 - 43913471
Alignment:
| Q |
164 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
43913552 |
ttcattttagacgaatcattgctcttcacactgacattaatctgggagactgttcttttctagatacttgccggcacatgaa |
43913471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 8635122 - 8635071
Alignment:
| Q |
164 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactg |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||| ||| |||||||| |
|
|
| T |
8635122 |
ttcattttagacgaatcatttctcttcatactggctttagtttaggagactg |
8635071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 8623658 - 8623758
Alignment:
| Q |
62 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
161 |
Q |
| |
|
||||||||||||||| ||| | |||| |||| | | | ||||||| || | ||||||| || |||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
8623658 |
agttcaaaactaaagatggatatcaggtgaggcaacactgtgactgactgatgaaagaagtttatcgacgccggaccggttcctttgtagcatgtgataa |
8623757 |
T |
|
| Q |
162 |
g |
162 |
Q |
| |
|
| |
|
|
| T |
8623758 |
g |
8623758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University