View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_high_17 (Length: 250)
Name: NF7539_high_17
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 41977479 - 41977245
Alignment:
| Q |
5 |
aacaaggaacataattcatgataacgtataaatcaagttcaaaataaaacacgcatagataaattgaacggaaaggaagacggttacagatttttcaggg |
104 |
Q |
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| T |
41977479 |
aacaaggaacataattcatgataacgtataaatcaagttcaaaataaaacacgcatagataaattgatcggaaaggaagacggttacagatttttcaggg |
41977380 |
T |
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| Q |
105 |
ttatcatgatcaacgcgcactcaattagttgttcgtaagacagaatatttgcataaagataaaaacgactcgcattttgcgtaactgtttaaacttagat |
204 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41977379 |
ttatcatgataaacgcgcactcaattagttgttcgtaagacagaatatttgcataaagataaaaacgactcgtattttgcgtaactgtttaaacttagat |
41977280 |
T |
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| Q |
205 |
tcacgcaattaaaaatatgattcctttgaattcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41977279 |
tcacgcaattaaaaatatgattcctttgaattcat |
41977245 |
T |
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