View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_high_22 (Length: 238)
Name: NF7539_high_22
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 42079173 - 42079395
Alignment:
| Q |
16 |
ataatgtgatacattagacagtgaatttatttgatcgggcaaggttggtcatagtaagccatggacattgacatttgtagcgcacataggacaaggacaa |
115 |
Q |
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| T |
42079173 |
ataatgtgatacattagacagtgaatttatttgatcgggcaaggttggtcatagtaagcgatgggcattgacatttgtagcgcacataggacaaggacaa |
42079272 |
T |
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| Q |
116 |
ttatgcaggttggatggtcgttctttaaagggaagtttagaacctttaaaaaagtaagttgtgttggcaaacatcacattaaaaagcgaacgaattgata |
215 |
Q |
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| T |
42079273 |
ttatgcaggttggatggtagttctttaaagggaagtttagaacctttaaaaaagtaagttgtgttggcaaacatggcattaaaaagcgaacgaattgata |
42079372 |
T |
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| Q |
216 |
tttaagagttgtcttttttggtg |
238 |
Q |
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|||||| |||||||| ||||||| |
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| T |
42079373 |
tttaagggttgtcttctttggtg |
42079395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 42081606 - 42081783
Alignment:
| Q |
22 |
tgatacattagacagtgaatttatttgatcgggcaaggttggtcatagtaagccatggacattgacatttgtagcgcacataggacaaggacaattatgc |
121 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||| |||||| || ||| ||| |||||||| | ||| ||||||| ||||| ||||| |
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| T |
42081606 |
tgatgcattagacaatgaatttatttgatcgggcaaggttggtcagagtaagtgatcgacgttgtcatttgtaacacacctaggacatggacagttatgt |
42081705 |
T |
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| Q |
122 |
aggttggatggtcgttctttaaagggaagtttagaacctttaaaaaagtaagttgtgttggcaaacatcacattaaaa |
199 |
Q |
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| T |
42081706 |
gggttggttggtcgttctttaaagggaagtttaaaacctttaaaaaagtaagctgtgttggaaaacacgacattaaaa |
42081783 |
T |
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