View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_high_24 (Length: 226)
Name: NF7539_high_24
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6451756 - 6451531
Alignment:
| Q |
1 |
gggaaaaaatgattaaaattgataatgatttgactcacttgatgtctaggtccaactctaaatcaagctaaatccagctctaggattcttctaatattca |
100 |
Q |
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| T |
6451756 |
gggaaaaaatgattaaaattgataatgatttgactcacttgatttctaggtccaactctaaatcaagctaaatccagctctaggattcttctaatattca |
6451657 |
T |
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| Q |
101 |
ttaaatttccttttaatatagctttgatatttttaaataaaatatttgtgaatatgattctcatttatatagnnnnnnngtgtagattagttaggacgta |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6451656 |
ttaaatttccttttaatatagctttggtatttttaaataaaatatttgtgaatatgattctcatttatatagaaaaaaagtgtagattagttaggacgta |
6451557 |
T |
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| Q |
201 |
tagtgggcaataaaggacgagctgta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6451556 |
tagtgggcaataaaggacgagctgta |
6451531 |
T |
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