View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_high_4 (Length: 436)
Name: NF7539_high_4
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 36440700 - 36440336
Alignment:
| Q |
17 |
gtattgacattaacaaagtgattgatggtactaaaatgtacaacacacatgaactgtccatgaagaatcaagtcagatttctaacaaacagatttactaa |
116 |
Q |
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| T |
36440700 |
gtattgacattaacaaagtgattgatggtactaaaatgtacaacacacatgaactgtccatgaagaatcaagtcagatttctaacaaacagatttactaa |
36440601 |
T |
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| Q |
117 |
ctatgtgcctctatctagagccacataagttccctaagaatttaatatcatgcaactaccaaggtaccaatttttcaatttttagttgtatgtctcaatc |
216 |
Q |
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| T |
36440600 |
ctatgtgcctctatctagagccacataagttccctaagaatttaatatcatgcaactaccaaggtaccaatttttcaatttttagttgtatgtctcaatc |
36440501 |
T |
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| Q |
217 |
acactcctttactcacaggacccatatataacaactcatgcatattcatccccagatcagcacgcattctcatcattaatgataaaagtaactcaaattc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36440500 |
gcactcctttactcacaggacccatatataacaactcatgcatattcatccccagatcagcacgcattctcatcattaatgataaaagtaactcaaattc |
36440401 |
T |
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| Q |
317 |
aacttgttcatttctaatccttttcactcatcaaatgctattcataacaccatgaaagaggttcc |
381 |
Q |
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| T |
36440400 |
aacttgttcatttctaatccttttcactcatcaaatgctattcataacaccatgaaagaggttcc |
36440336 |
T |
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