View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_high_5 (Length: 433)
Name: NF7539_high_5
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 5621829 - 5622206
Alignment:
| Q |
14 |
tgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccattaagttgt |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621829 |
tgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccattaagttgt |
5621928 |
T |
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| Q |
114 |
aatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatcagtaact |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621929 |
aatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatcagtaact |
5622028 |
T |
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| Q |
214 |
attgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtatttta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5622029 |
attgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttcgtatttta |
5622128 |
T |
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| Q |
314 |
ctggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgt |
391 |
Q |
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| T |
5622129 |
ctggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgt |
5622206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 239 - 393
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
239 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
338 |
Q |
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| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
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| Q |
339 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
393 |
Q |
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| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 239 - 393
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
239 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
338 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
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| Q |
339 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
393 |
Q |
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| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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