View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_high_9 (Length: 362)
Name: NF7539_high_9
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 48371562 - 48371902
Alignment:
| Q |
14 |
tcttccatttttgttttggtatggctcatggccatctccccaaacctgaaaagagtcaccacagaatgccctgaatgggcaatcatgatcccttccacag |
113 |
Q |
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| T |
48371562 |
tcttccatttttgttttggtatggctcatggccatctccccaaacctgaaaagagtcaccacagaatgccctgaatgggcaatcatgatcccttccacag |
48371661 |
T |
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| Q |
114 |
gcctgtaatcatcaaggaatgaattgatcgttgtttcccaataaaccgcgtcgcctccattggattgtatgcgggtcagatgagaatcctcaatgtgaac |
213 |
Q |
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| T |
48371662 |
gcctgtaatcatcaaggaatgaattgatcgttgtttcccaataaaccgcgtcacctccattggattgtatgcgggtcagatgagaatcctcaatgtgaac |
48371761 |
T |
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| Q |
214 |
aagaagcccagttttctgactaaagtatccgaataagacatgtctaataatctcagcaggaccctcgctccgagccttcagtgtttccggatctgtacag |
313 |
Q |
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| T |
48371762 |
aagaagcccagttttctgactaaagtatccgaataagacatgtctaataatctcagcaggaccctcgctccgagccttcagtgtttccggatctgtacag |
48371861 |
T |
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| Q |
314 |
tgcttaaggatgaagcaatcctcaccattgatattcttctc |
354 |
Q |
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| T |
48371862 |
tgcttaaggatgaagcaatcctcaccattgatattcttctc |
48371902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 284
Target Start/End: Original strand, 5406373 - 5406604
Alignment:
| Q |
53 |
ccaaacctgaaaagagtcaccacagaatgccctgaatgggcaatcatgatcccttccacaggcctgtaatcatcaaggaatgaattgatcgttgtttccc |
152 |
Q |
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| T |
5406373 |
ccaaacctgaatagtgtcactacagatcgacctgagtgagcaatcataatcccttcaacaggtctgtagtcgtcaagaaatgaatttatcgtggtctccc |
5406472 |
T |
|
| Q |
153 |
aataaaccgcgtcgcctccattggattgtatgcgggtcagatgagaatcctcaatgtgaacaagaagcccagttttctgactaaagtatccgaataagac |
252 |
Q |
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| T |
5406473 |
aataaactgcatcgcctccattgttctgaatacgggtcaaatgggaatcttccaagtgaacaagaagtcctgttttctgactaaagtatccgaacaaaac |
5406572 |
T |
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| Q |
253 |
atgtctaataatctcagcaggaccctcgctcc |
284 |
Q |
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| T |
5406573 |
gtgccttatgatctctgctggaccttcgctcc |
5406604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 47317746 - 47317521
Alignment:
| Q |
14 |
tcttccatttttgttttggtatggctcatggccatctccccaaacctgaaaagagtcaccacagaatgccctgaatgggcaatcatgatcccttccacag |
113 |
Q |
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||||||||| | ||||| || |||||||| || | || |||||| ||||||| ||||| |||| | || ||||| |||||||| |||||||| || | |
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| T |
47317746 |
tcttccattctagttttagtgtggctcattgctgtttctccaaacttgaaaagtgtcacttgagaacgacccgaatgagcaatcataatcccttcaacgg |
47317647 |
T |
|
| Q |
114 |
gcctgtaatcatcaaggaatgaattgatcgttgtttcccaataaaccgcgtcgcctccattggattgtatgcgggtcagatgagaatcctcaatgtgaac |
213 |
Q |
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| T |
47317646 |
gtctgtaatcgtcaaggaatgaattgattgtggtctcccaataaacagcatcgcctccgttgttctgaatacgagtcaaatgggaatcttccaagtgaat |
47317547 |
T |
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| Q |
214 |
aagaagcccagttttctgactaaagt |
239 |
Q |
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|||||| || |||||||||||||||| |
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| T |
47317546 |
aagaagtcctgttttctgactaaagt |
47317521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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