View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7539_low_1 (Length: 1025)
Name: NF7539_low_1
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 799; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 57 - 898
Target Start/End: Original strand, 5638469 - 5639311
Alignment:
| Q |
57 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
157 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
5638668 |
T |
|
| Q |
257 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtnnnnnnnntagtcatggtttgt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5638669 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgt |
5638768 |
T |
|
| Q |
357 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638769 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
5638868 |
T |
|
| Q |
457 |
tttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagt |
555 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
5638869 |
tttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagt |
5638968 |
T |
|
| Q |
556 |
acgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638969 |
acgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
5639068 |
T |
|
| Q |
656 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatct |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5639069 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatct |
5639168 |
T |
|
| Q |
756 |
gtatgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacg |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5639169 |
gtatgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacg |
5639268 |
T |
|
| Q |
856 |
tccttgaggaaaatcccaatctattaacaaaattgaagaacaa |
898 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639269 |
tccttgaggaaaatcccaatctattaacaaaattgaagaacaa |
5639311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 638 - 951
Target Start/End: Original strand, 22965261 - 22965574
Alignment:
| Q |
638 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccat |
737 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| | ||||||||| |||||||||||||||| |
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|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataacttacatcttggttgataatgccttctcatccat |
22965360 |
T |
|
| Q |
738 |
ttccctgctctaatatctgtatgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctg |
837 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
22965361 |
ttcccttctctaatatctttatgttttcaaatttggcagcgattgagtagctctggctatgtcttttctgcttctttgcctccatatcttgcaagtgctg |
22965460 |
T |
|
| Q |
838 |
ccattacagctattgacgtccttgaggaaaatcccaatctattaacaaaattgaagaacaacattgatgttttatggaaaggtagggtttgatctcattg |
937 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||| ||| ||||||||||||||||| |
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|
| T |
22965461 |
ccattacaactattgacgtccttgaggaaaatcccaatctattagcaaagttgaagagcaacattgatgtgttatggagagggagggtttgatctcattg |
22965560 |
T |
|
| Q |
938 |
ctactgtcatgaat |
951 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22965561 |
ctactgtcatgaat |
22965574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 895 - 1010
Target Start/End: Original strand, 5651139 - 5651254
Alignment:
| Q |
895 |
acaacattgatgttttatggaaaggtagggtttgatctcattgctactgtcatgaatggaactgtatcgcagtagtgtccacaatttggcttgcacacaa |
994 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5651139 |
acaatattgatgttttatggaaaggtagggtttgatctcattgctactgtcatgaatggaactgtatcgcagcagtgtccacaatttggcttgcacacaa |
5651238 |
T |
|
| Q |
995 |
cagtttgaattgatgt |
1010 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5651239 |
cagtttgaattgatgt |
5651254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5638413 - 5638448
Alignment:
| Q |
1 |
gtactaaaaagttctatttgggcgtgggtgtgtata |
36 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5638413 |
gtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 640 - 951
Target Start/End: Complemental strand, 38954654 - 38954349
Alignment:
| Q |
640 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccattt |
739 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataacttacatcttggttgataatgccttctcatccattt |
38954555 |
T |
|
| Q |
740 |
ccctgctctaatatctgtatgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgcc |
839 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38954554 |
cccttctctaatatctttatgttttcaaatttggcagcgatat------tctggctatgtcttttctgcttctttgcctccatatcttgcaagtgctgcc |
38954461 |
T |
|
| Q |
840 |
attacagctattgacgtccttgaggaaaatcccaatctattaacaaaattgaagaacaacattgatgttttatggaaaggtagggtttgatctcattgct |
939 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
38954460 |
attacagctattgacgtccttgaggaaaatcccaatctattagcaaagttgaagagcaacattgatgtgttatggaaagggagggtttgatctcattgct |
38954361 |
T |
|
| Q |
940 |
actgtcatgaat |
951 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38954360 |
actgtcatgaat |
38954349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 759 - 961
Target Start/End: Complemental strand, 21423032 - 21422829
Alignment:
| Q |
759 |
tgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtcc |
858 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
21423032 |
tgttttcaacttttacagcgattgagtagctctggctacgtcttttctgcttctttgcctccatatcttgcaagcgctgcaattacagctattgatgtcc |
21422933 |
T |
|
| Q |
859 |
ttgaggaaaatcccaatctattaacaaaattgaagaacaacattgatgttttatggaaaggtagggtttgatctca-ttgctactgtcatgaatggaact |
957 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||| |||||| ||| ||||||| |||| ||||||| | |
|
|
| T |
21422932 |
ttgacgaaaatcccaatgtattaacaaagttgaagaacaacattgctgtgttatggaaaggtaggctttgatatcacctgctactttcataaatggaatt |
21422833 |
T |
|
| Q |
958 |
gtat |
961 |
Q |
| |
|
|||| |
|
|
| T |
21422832 |
gtat |
21422829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
98 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
|
| Q |
198 |
tcaccaagtatggtagtgtcat |
219 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 92 - 265
Target Start/End: Complemental strand, 30634501 - 30634326
Alignment:
| Q |
92 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
191 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
|
| Q |
192 |
tatagatcaccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
265 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
|
|
| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 774 - 930
Target Start/End: Complemental strand, 30634231 - 30634075
Alignment:
| Q |
774 |
cagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatccca |
873 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
30634231 |
cagcgattgagcagctctggctacgtcttttctgcttctttgcctccatatcttgcaagcgctgcaattacagctattgatgtccttgacgaaaatccca |
30634132 |
T |
|
| Q |
874 |
atctattaacaaaattgaagaacaacattgatgttttatggaaaggtagggtttgat |
930 |
Q |
| |
|
|| |||||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
30634131 |
atatattaacaaagttgaagaacaacattgctgtgttatggaaaggtaggctttgat |
30634075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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