View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_11 (Length: 370)
Name: NF7539_low_11
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 87 - 354
Target Start/End: Complemental strand, 45702939 - 45702672
Alignment:
| Q |
87 |
ccgcataagttttgttgcttgcaaaataacgagaataaataaaagagaatgaaccagaatggtgaaacaataaggattcctctgatcccctatctcctcg |
186 |
Q |
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| T |
45702939 |
ccgcataagatttgttgcttgcaaaataacgagaataaataaaagagaatgaacgaaaatggtgaaacaataaggattcctctgatcccctatctcctcg |
45702840 |
T |
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| Q |
187 |
ttgggtaaatcaagttcctaattcaactgctacggtttgagatttatggtcataacgcataacaaagtagaccaatcctagttacacctcaaggtataat |
286 |
Q |
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| T |
45702839 |
ttgggtaaatcaagttcctaattcaactgctacggtttgaggtttatggtcataacgcataacaaagtagagcaatcctagttacacctcaaggtataat |
45702740 |
T |
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| Q |
287 |
ttatgtaatattgcccccaaagggttagtagcggacttatgttatcaaaatccaaaggcataaaagtg |
354 |
Q |
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| T |
45702739 |
ttatgtaatattgcccccaaagggttagtagcggacttatgttatcaaaatccaaaggcataaaagtg |
45702672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 45703015 - 45702963
Alignment:
| Q |
16 |
atagtaagtagatatagtctccatagagattgtgagtttcctactcggtaatg |
68 |
Q |
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| T |
45703015 |
atagtaagtagatatagtctccatagagattgtgagtttcctactcggtaatg |
45702963 |
T |
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