View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7539_low_13 (Length: 336)

Name: NF7539_low_13
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7539_low_13
NF7539_low_13
[»] chr1 (2 HSPs)
chr1 (8-80)||(47932907-47932979)
chr1 (261-334)||(41866005-41866078)
[»] chr4 (4 HSPs)
chr4 (256-334)||(28335568-28335645)
chr4 (256-334)||(44787523-44787600)
chr4 (117-202)||(28335688-28335774)
chr4 (117-202)||(44787643-44787729)
[»] scaffold1526 (1 HSPs)
scaffold1526 (256-308)||(539-591)
[»] scaffold0016 (1 HSPs)
scaffold0016 (256-308)||(53225-53277)
[»] chr8 (1 HSPs)
chr8 (256-308)||(44496188-44496240)
[»] scaffold0642 (1 HSPs)
scaffold0642 (257-308)||(4731-4782)
[»] scaffold0345 (1 HSPs)
scaffold0345 (257-308)||(14643-14694)
[»] scaffold0105 (1 HSPs)
scaffold0105 (257-308)||(24287-24338)
[»] chr2 (1 HSPs)
chr2 (256-308)||(3378922-3378974)
[»] chr5 (1 HSPs)
chr5 (13-53)||(18448043-18448083)
[»] chr3 (1 HSPs)
chr3 (13-53)||(55351745-55351785)


Alignment Details
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 47932907 - 47932979
Alignment:
Q  8 tggtgttcgctggttacagaggtggtgccggtgccggaagtggaactatggcagatggtcggtggttacggtg 80  Q
    ||||| ||| ||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  47932907 tggtggtcggtggttacggcggtggtgacggtgccggaagtggaactatggcagatggtcagtggttacggtg 47932979  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 41866078 - 41866005
Alignment:
Q  261 attctttgttttgcttcatattttatgagtcttactaacctaatttgaattttgtggcaaaaattcattgattt 334  Q
    ||||||| |||| ||||||||||||| || |||| || ||| ||||||| ||||||||||| | ||||||||||    
T  41866078 attctttatttttcttcatattttattagccttattagccttatttgaactttgtggcaaatactcattgattt 41866005  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 28335645 - 28335568
Alignment:
Q  256 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttgaattttgtggcaaaaattcattgattt 334  Q
    ||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  28335645 gttttattctttgcttttcctcacattttatgagtcttgctaacctaatttgaa-cttgtggcaaaaactcattgattt 28335568  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 44787600 - 44787523
Alignment:
Q  256 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttgaattttgtggcaaaaattcattgattt 334  Q
    ||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  44787600 gttttattctttgcttttcctcacattttatgagtcttgctaacctaatttgaa-cttgtggcaaaaactcattgattt 44787523  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 28335774 - 28335688
Alignment:
Q  117 tgactgcattcctctattttatctatagtgaaatctggctgtgtaccttttatagctctactgccaccattacgctt-tgattctaa 202  Q
    ||||||||||||||||||||||| || |||||||||    || ||||||||||  ||||| ||||||||||| |||| |||||||||    
T  28335774 tgactgcattcctctattttatccattgtgaaatctaatagtttaccttttatctctctattgccaccattatgcttctgattctaa 28335688  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 44787729 - 44787643
Alignment:
Q  117 tgactgcattcctctattttatctatagtgaaatctggctgtgtaccttttatagctctactgccaccattacgctt-tgattctaa 202  Q
    ||||||||||||||||||||||| || |||||||||    || ||||||||||  ||||| ||||||||||| |||| |||||||||    
T  44787729 tgactgcattcctctattttatccattgtgaaatctaatagtttaccttttatctctctattgccaccattatgcttctgattctaa 44787643  T

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Target: scaffold1526 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 591 - 539
Alignment:
Q  256 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  591 gttttattctttgctttccttcacattttatgagtcttactaacctaatttga 539  T

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Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 53277 - 53225
Alignment:
Q  256 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  53277 gttttattctttgatttccttcacattttatgagtcttactaacctaatttga 53225  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 44496188 - 44496240
Alignment:
Q  256 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  44496188 gttttattctttgctttccttcacattttatgagtcttactaacctaatttga 44496240  T

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Target: scaffold0642 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 4731 - 4782
Alignment:
Q  257 ttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  4731 ttttattctttgctttccttcacattttatgagtcttactaacctaatttga 4782  T

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Target: scaffold0345 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 14643 - 14694
Alignment:
Q  257 ttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  14643 ttttattctttgctttccttcacattttatgagtcttactaacctaatttga 14694  T

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Target: scaffold0105 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 24338 - 24287
Alignment:
Q  257 ttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  24338 ttttattctttgctttccttcacattttatgagtcttactaacctaatttga 24287  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 3378922 - 3378974
Alignment:
Q  256 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 308  Q
    |||||||| |||| ||| ||||| |||||||||||||||||||||||||||||    
T  3378922 gttttattatttgctttccttcacattttatgagtcttactaacctaatttga 3378974  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 18448083 - 18448043
Alignment:
Q  13 ttcgctggttacagaggtggtgccggtgccggaagtggaac 53  Q
    |||| ||||||| ||||||||| ||||||||||||||||||    
T  18448083 ttcggtggttacggaggtggtgacggtgccggaagtggaac 18448043  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 55351745 - 55351785
Alignment:
Q  13 ttcgctggttacagaggtggtgccggtgccggaagtggaac 53  Q
    |||| ||||||| ||||||||| ||||||||||||||||||    
T  55351745 ttcggtggttacggaggtggtgacggtgccggaagtggaac 55351785  T

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