View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_14 (Length: 312)
Name: NF7539_low_14
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 41696148 - 41695837
Alignment:
| Q |
1 |
tactatttaattgacattaaacataggacgacacttcaccaattggactatcattcatctaatccatcacatcctttccaattatggagacaataaaata |
100 |
Q |
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| T |
41696148 |
tactatttaattgacattaaacataggacgacacttcaccaattggactatcattcatctaatccatcacatcctttccaattatggagacaataaaata |
41696049 |
T |
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| Q |
101 |
cctcaacccttccaacttccacacataaagttttgtggtactactatcaaaatttccctaccaacacctacctattagaattttcattaatactccaaac |
200 |
Q |
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| T |
41696048 |
cctcaacccttccaacttccacacataaagttttgtggtactactatcaaaatttccctaccaacacctacctattagaattttcattaatactccaaac |
41695949 |
T |
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| Q |
201 |
acaagcaaaaatggaggaagggttagataaagatgatggtttgagatcaataagcagcctaaggatgaacattggatcttcaagtagtagaagttggaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41695948 |
acaagcaaaaatggaggaagggttagataaagatgatggtttgagatcaataagcagcctaaggatgaacattggatcttcaagtagtagaagttggaca |
41695849 |
T |
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| Q |
301 |
tcaacaagtgtt |
312 |
Q |
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|||||||||||| |
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| T |
41695848 |
tcaacaagtgtt |
41695837 |
T |
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