View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_15 (Length: 302)
Name: NF7539_low_15
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 2323140 - 2322872
Alignment:
| Q |
23 |
aaatgaattatatttagggttgtgaccgcacaaatgttcttctaaaattgttacacacttggagtttgattaattagatagtctgtaatctctaactgaa |
122 |
Q |
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| T |
2323140 |
aaatgaattatatttaggattgtgaccacacaaatgttgttctaaaattattacacacttggagtttgattaattagatagtctgtaatctctaactgaa |
2323041 |
T |
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| Q |
123 |
tctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaatttctattgaaccaaattacaagatcagag |
222 |
Q |
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| T |
2323040 |
tctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaatttctattgaaccaaattacaagatcagag |
2322941 |
T |
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| Q |
223 |
attttgtctctgttttctagtatgatttcaataagttaatcattcatttgaagaatgctctctctgatg |
291 |
Q |
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| T |
2322940 |
attttgtctctgttttctagtatgatttcaataagttaatcattcatttgaagaatgctctctctgatg |
2322872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2312119 - 2311885
Alignment:
| Q |
1 |
ttttcaagttttgtgaggttgcaaatgaattatatttagggttgtgaccgcacaaatgttcttctaaaattgttacacacttggagtttgattaattaga |
100 |
Q |
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| T |
2312119 |
ttttcaagttttgtgaatgtgcgaatgaattatatttggggttttgaccatagaagtgttcttctaaaactgttacacacttggagtt-gattaattaga |
2312021 |
T |
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| Q |
101 |
tagtct--------gtaatctctaactgaatctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaa |
192 |
Q |
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| T |
2312020 |
taggcttttgaactgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcaatctaa |
2311921 |
T |
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| Q |
193 |
tttctattgaacca-aattacaagatcagagatttt |
227 |
Q |
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| T |
2311920 |
tttctattgaaccacaattacaagatgagatatttt |
2311885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2296305 - 2296071
Alignment:
| Q |
1 |
ttttcaagttttgtgaggttgcaaatgaattatatttagggttgtgaccgcacaaatgttcttctaaaattgttacacacttggagtttgattaattaga |
100 |
Q |
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|||||||||||||| | ||| |||||||||||||| ||||| ||||| | || ||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
2296305 |
ttttcaagttttgtaaatgtgcgaatgaattatatttggggttttgaccatagaagtgttcttctaaaactgttacacacttggagtt-gattaattaga |
2296207 |
T |
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| Q |
101 |
tagtct--------gtaatctctaactgaatctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaa |
192 |
Q |
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|| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
2296206 |
taagcttttgaactgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcattctaa |
2296107 |
T |
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| Q |
193 |
tttctattgaacca-aattacaagatcagagatttt |
227 |
Q |
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| T |
2296106 |
tttctattgaaccacgattacaagatgagatatttt |
2296071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 2335253 - 2335185
Alignment:
| Q |
20 |
tgcaaatgaattatatttagggttgtgaccgcacaaatgttcttctaaaattgttacacacttggagtt |
88 |
Q |
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|||||||||||||||||||||||| | ||| || | |||||| |||||||||||||||||||||||||| |
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| T |
2335253 |
tgcaaatgaattatatttagggttataaccacatatatgttcctctaaaattgttacacacttggagtt |
2335185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 32340112 - 32340151
Alignment:
| Q |
22 |
caaatgaattatatttagggttgtgaccgcacaaatgttc |
61 |
Q |
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| T |
32340112 |
caaatgaattatatttagggttgtgaccgcacaagtgttc |
32340151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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