View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_17 (Length: 295)
Name: NF7539_low_17
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 8037196 - 8036929
Alignment:
| Q |
17 |
ctttgagctcgaaggagttcttcaagcaaaacggtgacgatggagtcatgttgatcatctgctaattttcttttcccttcttttgaagatttgataaatg |
116 |
Q |
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| T |
8037196 |
ctttgagctcgaaggagttcttcaagcaaaacggtgacgatagagtcatgttgatcatctgctaattttgttttcccttcttttgaagatttgataaatg |
8037097 |
T |
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| Q |
117 |
gcataaaggcttcaagcttaggacaaaacccccacatattagatttctaatcaagatggttactacatactaatagtactaatactaattaatagtaata |
216 |
Q |
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| T |
8037096 |
gcataaaggcttcaagcttaggacaaaacccccacatattagatttctaatcaagatggttactacatactaatagtaccaatagtaattaatagtaata |
8036997 |
T |
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| Q |
217 |
ataagcatgtaaatggtacctcacatagaagtccatttcttgaacgcaagatggttaccggctttctt |
284 |
Q |
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| T |
8036996 |
ataagcatgtaaatggtacctcacatagaagtccatttcttgaacgcaagatggttaccggctttctt |
8036929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 43904928 - 43904873
Alignment:
| Q |
213 |
aataataagcatgtaaatggtacctcacatagaagtccatttcttgaacgcaagat |
268 |
Q |
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| T |
43904928 |
aataataagcatgtaaatggtacctcaattagaagtttatttcttgaatgcaagat |
43904873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 12349357 - 12349301
Alignment:
| Q |
213 |
aataataagcatgtaaatggtacctcacatagaagtccatttcttgaacgcaagatg |
269 |
Q |
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|||||| |||||||| | ||||||||| |||||||| ||||||||||| || ||||| |
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| T |
12349357 |
aataattagcatgtacacggtacctcaaatagaagttcatttcttgaatgctagatg |
12349301 |
T |
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