View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_28 (Length: 217)
Name: NF7539_low_28
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 48323234 - 48323052
Alignment:
| Q |
16 |
cacaatggaaggacatccatttgtcatttgtttgcaaggaagttcactcctcatgctttggatagattggttagatatgcttcaaagttaatgcaattca |
115 |
Q |
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| T |
48323234 |
cacaatggaaggacatccatttgtcatttgtttgcaaggaagttcactcctcatgctttggatatattggttagatatgctccaaagttaatgcaattca |
48323135 |
T |
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| Q |
116 |
attgatcttacatttcagtttcagatatatattttgttttgttttcttccattgattatgttcacttgtgctacattttcccccacag |
203 |
Q |
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| T |
48323134 |
attgattttacatttcag----atatatat-ttttgttttgttttcttccattgattatgttcacttgtgctacattttcccccacag |
48323052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 31266357 - 31266265
Alignment:
| Q |
35 |
tttgtcatttgtttgcaaggaagttcactcctcatgctttggatagattggttagatatgcttcaaagttaatgcaattcaattgatcttaca |
127 |
Q |
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| T |
31266357 |
tttgtcatttgtttgcaaggaaattcactcctcatgctttggatagattgcttagatttgctccaaagttgatgcaattcaattgattttaca |
31266265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 54474327 - 54474220
Alignment:
| Q |
17 |
acaatggaaggacatcca---tttgtcatttgtttgcaaggaagttcactcctcatgctttggatagattggttagatatgcttcaaagttaatgcaatt |
113 |
Q |
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| T |
54474327 |
acaatggaaggacaaccaatgtttgccatttgtttgcaaggaaattcagtcctgatgctttggatagtttgctcagatttgctaaagatttaatgcaatt |
54474228 |
T |
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| Q |
114 |
caattgat |
121 |
Q |
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| T |
54474227 |
caattgat |
54474220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 1137802 - 1137888
Alignment:
| Q |
35 |
tttgtcatttgtttgcaaggaagttcactcctcatgctttggatagattggttagatatgcttcaaagttaatgcaattcaattgat |
121 |
Q |
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| T |
1137802 |
tttgtcatttgtttgcaaggaaattcggaactcaagctttggatggattgctcacatttgccccaaagttaatgcaattcaattgat |
1137888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 1141263 - 1141349
Alignment:
| Q |
35 |
tttgtcatttgtttgcaaggaagttcactcctcatgctttggatagattggttagatatgcttcaaagttaatgcaattcaattgat |
121 |
Q |
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| T |
1141263 |
tttgtcatttgtttgcaaggaaattcggtactcaagctttggatggactgctcacatttgcaccaaagttaatgcaattcaattgat |
1141349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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