View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7539_low_29 (Length: 216)
Name: NF7539_low_29
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 923102 - 922925
Alignment:
| Q |
17 |
aatatcaattttaaagaaaaatactattttcatgaacgtgataaaatatggagaaaaaatgcaatcgaatctttatacataagcataatctccaacgtca |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
923102 |
aatatcaattttaaagaaaaagactattttcatgaacgtgataaaatatggagaaaaaatgcaatcgaatctttatacataagcataatctccaacatca |
923003 |
T |
|
| Q |
117 |
attcttcttcttattccactcttctggtcgcagcctttttctcggtaaaagattgttttttaaaaccttgtctgtcat |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
923002 |
attcttcttcttcttccactcttctggtcgcggcctttttctcggtaaaatattgttttttaaaaccttatatgtcat |
922925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 39426576 - 39426613
Alignment:
| Q |
149 |
gcctttttctcggtaaaagattgttttttaaaaccttg |
186 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
39426576 |
gcctttttctcggtaacagactgttttttaaaaccttg |
39426613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University