View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_4 (Length: 673)
Name: NF7539_low_4
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 632; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 18 - 667
Target Start/End: Complemental strand, 5446349 - 5445703
Alignment:
| Q |
18 |
actaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaatattattgctgcttgaacagcggcgccataagccaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5446349 |
actaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaatatt---gctgcttgaacagcggcgccataagccaca |
5446253 |
T |
|
| Q |
118 |
gcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaaacatattcttcaatagttgttgaatcttcggaattctagtagacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5446252 |
gcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaaacatattcttcaatagttgttgaatcttcggaattgtagtagacc |
5446153 |
T |
|
| Q |
218 |
ctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446152 |
ctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtt |
5446053 |
T |
|
| Q |
318 |
tatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaagtaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446052 |
tatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaagtaac |
5445953 |
T |
|
| Q |
418 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445952 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
5445853 |
T |
|
| Q |
518 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaagga |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445852 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaagga |
5445753 |
T |
|
| Q |
618 |
aacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcac |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445752 |
aacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcac |
5445703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 405 - 650
Target Start/End: Original strand, 5440705 - 5440959
Alignment:
| Q |
405 |
tgaagaaagtaacctctttgctttctcacatgctgatcttaac----ctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttct |
500 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5440705 |
tgaagaaggtaacctctttgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactgatcttcaaatccttcttgtactttct |
5440804 |
T |
|
| Q |
501 |
atgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatgtggccttaacctggaacattcc |
596 |
Q |
| |
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|| |||||||||||||||| ||||||||||||||||||| || |||| | ||||||| || | |||| || |||||| || ||||| | ||| ||||| |
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| T |
5440805 |
ataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatgttgctttaactttgaatattcc |
5440904 |
T |
|
| Q |
597 |
ttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacac |
650 |
Q |
| |
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||| |||||| | |||||||||||||| || |||||||||||||| || ||||| |
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| T |
5440905 |
ttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacac |
5440959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 418 - 585
Target Start/End: Original strand, 5433330 - 5433497
Alignment:
| Q |
418 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
517 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
5433330 |
ctctttactttatcacatgctgaccttaatctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaa |
5433429 |
T |
|
| Q |
518 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacc |
585 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |||||| |
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| T |
5433430 |
gacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctttaacc |
5433497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 5433042 - 5433183
Alignment:
| Q |
28 |
ataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaatattattgctgcttgaacagcggcgccataagccacagcttcatcag |
127 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||||||||| | ||||||| ||||||||||| | ||| |||| ||||| |||||| || |
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| T |
5433042 |
ataacatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatatc---gctgcttgaaccgaggcatcatacaccacaacttcataag |
5433138 |
T |
|
| Q |
128 |
gattaatgcttttgcaaggctctttgacttcatcgttgactctaa |
172 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| | |||||||||| |
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| T |
5433139 |
gattaatgcttttgcatggctctttgatttctccattgactctaa |
5433183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 454 - 566
Target Start/End: Original strand, 5432453 - 5432565
Alignment:
| Q |
454 |
aaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccac |
553 |
Q |
| |
|
|||||||| ||||||||| || ||||| || ||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | ||| |
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| T |
5432453 |
aaagctttataattctcaccaatgttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcac |
5432552 |
T |
|
| Q |
554 |
ccaaatgagtatc |
566 |
Q |
| |
|
||||||||||||| |
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| T |
5432553 |
ccaaatgagtatc |
5432565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 5433197 - 5433294
Alignment:
| Q |
248 |
ttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
345 |
Q |
| |
|
||||||| |||||| ||||| || || | || |||| ||||||||||| | ||| ||||| |||| ||||||| ||||||| ||||||||||||||| |
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|
| T |
5433197 |
ttttacttatttttgcctcatcctaaaatttttccagtgtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
5433294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 7541887 - 7541936
Alignment:
| Q |
94 |
tgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
143 |
Q |
| |
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|||||||| || |||||||| ||||| ||||||||||||||||| ||||| |
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| T |
7541887 |
tgaacagctgccccataagcaacagcctcatcaggattaatgctcttgca |
7541936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 14703069 - 14703118
Alignment:
| Q |
94 |
tgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
143 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
14703069 |
tgaacagctgccccataagctacagcttcatcagggttaatgctgttgca |
14703118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 17704485 - 17704436
Alignment:
| Q |
183 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaa |
232 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
17704485 |
caatagttgttgaacctttggaattctggtagaacctcctacaaggacaa |
17704436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 17717117 - 17717068
Alignment:
| Q |
183 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaa |
232 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||| ||||||||||| |||| |
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|
| T |
17717117 |
caatagttgttgaacctttggaattctggtagaacctcctacaaggacaa |
17717068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 11999066 - 11999118
Alignment:
| Q |
91 |
gcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
143 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
11999066 |
gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgca |
11999118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 54396078 - 54396142
Alignment:
| Q |
88 |
gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctcttt |
152 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| ||||| || |||||| ||||||| |
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| T |
54396078 |
gctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctcttt |
54396142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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