View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_6 (Length: 622)
Name: NF7539_low_6
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 10250409 - 10251014
Alignment:
| Q |
1 |
gaaattggat-acttccaaattcaacgaggtttgacaaaataaaatgttttgtagaagttaaaccttatggcttatggtatacaattgaagatacaagac |
99 |
Q |
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| T |
10250409 |
gaaattggattacttccaaattcaacgaggtttgacaaaataaaatgttttgtagaagttaaaccttatggcttatggtatacaattgaagatacaagac |
10250508 |
T |
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| Q |
100 |
actataagtttatccttttgttacatatttggtagggtaaaaatttatttgcagcattaattttgacatgcttaattatgttttctgttctacatataaa |
199 |
Q |
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| T |
10250509 |
actataagtttatccttttgttacatatttggtagggtaaaaatttatttgcagcattaattttgacatgcttaattatgttttctgttctacagataaa |
10250608 |
T |
|
| Q |
200 |
aattgattcttctaccatcaaaatatcacatctctatctgcaagttaaactcaattcaaaatgacattgtttatatcaataaatatgacattgtattctt |
299 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10250609 |
aattga---ttctaccatcaaaatatcacatttctatctgcaagttaaactcaattcaaaatgacattgtttatatcaataaatatgacattatattctt |
10250705 |
T |
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| Q |
300 |
at----attaattgagttcaaaatgggggtagttgtgttagtactttcattaatttgtcaaagaaaaatggtagtagtaaattgggaccacataaaaaac |
395 |
Q |
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| T |
10250706 |
atattaattaattgagttcaaaatgggggtagttgtgttagtactttcattaatttgttaaagaaaaagggtagtagtaaattgggaccacataaaaaac |
10250805 |
T |
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| Q |
396 |
gtggcaatggattaaaaactctagaccaatctatataatatatatctttgaagaaataggtgaaccaaccacctaaccaaactgccttatacttgagctt |
495 |
Q |
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| T |
10250806 |
gtggcaatggattaaaaactctagaccaatctata----atctatctttgaagaaataggtgaaccaaccacctaaccaaactgccgtataattgagctt |
10250901 |
T |
|
| Q |
496 |
aattccccaaaccaaaataacttgaaagtgagtgttagtgaaattggaggcagacaactattatctatctat----tttgattatctgcttagcccaata |
591 |
Q |
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| T |
10250902 |
aattccccaaaccaaaataacttgaaagtgagtgttagtgaaattggaggcagacaactattatccatctatttaatttgattatctgcttagcccaata |
10251001 |
T |
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| Q |
592 |
ttgataatagact |
604 |
Q |
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| T |
10251002 |
tagataatagact |
10251014 |
T |
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