View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7539_low_9 (Length: 393)
Name: NF7539_low_9
Description: NF7539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7539_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 52782822 - 52782656
Alignment:
| Q |
18 |
tcttctgtatgggagaactccaattaacacatttctacttcnnnnnnngttaacccgtcattattgtaatctttaacctccaccggatgccccgagaaat |
117 |
Q |
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| T |
52782822 |
tcttctgtctgggagaactccaattaacacatttctactt-tttttttgttaacccgtcattattgtaatctttaacctccaccagatgccccgagaaat |
52782724 |
T |
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| Q |
118 |
ccccacaatcttagactctttagatttggtatgttaacccgtcattattgtaattttttataagcact |
185 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
52782723 |
ccccacaatcttagactctttagatttgctatgttaacccatcattattgtaattttttataagcact |
52782656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 52789086 - 52788920
Alignment:
| Q |
18 |
tcttctgtatgggagaactccaattaacacatttctacttcnnnnnnngttaacccgtcattattgtaatctttaacctccaccggatgccccgagaaat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52789086 |
tcttctgtctgggagaactccaattaacacatttctactt-tttttttgttaacccgtcattattgtaatctttaacctccaccagatgccccgagaaat |
52788988 |
T |
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| Q |
118 |
ccccacaatcttagactctttagatttggtatgttaacccgtcattattgtaattttttataagcact |
185 |
Q |
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| T |
52788987 |
ccccacaatcttagactctttagatttgctatgttaacccatcattattgtaattttttataagcact |
52788920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 260 - 382
Target Start/End: Complemental strand, 52782158 - 52782036
Alignment:
| Q |
260 |
ttaatttaaaagtataagttaacatttaannnnnnnacatgatggttannnnnnnncaaatggcaaatgttagatgttatttttcttatcaaggatattg |
359 |
Q |
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| T |
52782158 |
ttaatttaaaagtataagttaacatttaatttttttacatgatggttattttttttcaaatggcaaatgttagatgttatttttcttatcaaggatattg |
52782059 |
T |
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| Q |
360 |
aacccgtgattcacgacattctt |
382 |
Q |
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| T |
52782058 |
aacccgtgattcacgacattctt |
52782036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 52782600 - 52782567
Alignment:
| Q |
235 |
tgttttcacaactttttaaaagcaattaatttaa |
268 |
Q |
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| T |
52782600 |
tgttttcacaactttttaaaagcaattaatttaa |
52782567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 52788864 - 52788831
Alignment:
| Q |
235 |
tgttttcacaactttttaaaagcaattaatttaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52788864 |
tgttttcacaactttttaaaagcaattaatttaa |
52788831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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