View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7540_low_1 (Length: 314)
Name: NF7540_low_1
Description: NF7540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7540_low_1 |
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| [»] scaffold1113 (1 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 32683430 - 32683717
Alignment:
| Q |
20 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgttgaaggctgtaaataaaattag |
119 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683430 |
agctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgttgaaggctgtaaataaaattag |
32683528 |
T |
|
| Q |
120 |
gcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtgagtgttagacacttgggaagtgccaagctcgcaaatcttg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32683529 |
gcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttagacacttgggaagtgccaagctcgcaaatcttg |
32683628 |
T |
|
| Q |
220 |
tctatgcgtgtctggttattatgtactgattcctatataactatcgcaatgtgtcggtaatattatggttttgactcattctccagaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683629 |
tctatgcgtgtctggttattatgtactgattcctatataactatcgtaatgtgtcggtaatattatggttttgactcattctccagaat |
32683717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 32685140 - 32685382
Alignment:
| Q |
20 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgttgaaggctgtaaataaaattag |
119 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685140 |
agctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgttgaaggctgtaaataaaattag |
32685238 |
T |
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| Q |
120 |
gcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtgagtgttagacacttgggaagtgccaagctcgcaaatcttg |
219 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32685239 |
gcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttagacacttgggaagtgccaagctcgcaaatcttg |
32685338 |
T |
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| Q |
220 |
tctatgcgtgtctggttattatgtactgattcctatataactat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685339 |
tctatgcgtgtctggttattatgtactgattcctatataactat |
32685382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 81 - 246
Target Start/End: Complemental strand, 33010825 - 33010662
Alignment:
| Q |
81 |
gttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtga |
180 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| | ||| ||||||||||| |||||||||| ||||||||| |
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| T |
33010825 |
gttcaaataaaggatgttgaagg-tgtaaataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtga |
33010727 |
T |
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| Q |
181 |
gtgttagacacttgggaagtgccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtact |
246 |
Q |
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| |||| |||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
33010726 |
--gatagatacttgggaagagccaagcttgcaaatcttggtctatgcgtgtttggttattatgtact |
33010662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 34925256 - 34925139
Alignment:
| Q |
150 |
aactatgttttgttttatccttaagttgtgagtgttagacacttggga-agtg----ccaagctcgcaaatctt-gtctatgcgtgtctggttattatgt |
243 |
Q |
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|||||||||| |||||||| | |||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| |||||| |||||| ||| |
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| T |
34925256 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
34925157 |
T |
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| Q |
244 |
actgattcctatataact |
261 |
Q |
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||| ||||||||||||| |
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| T |
34925156 |
actatttcctatataact |
34925139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33011204 - 33011259
Alignment:
| Q |
19 |
aagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
74 |
Q |
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|
||||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |
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| T |
33011204 |
aagctgaagttccaaaccagcaggagaacgaagattaagaagaaagaaatccaaaa |
33011259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 33010921 - 33010870
Alignment:
| Q |
20 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatcca |
71 |
Q |
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|||||||||||||||||||| |||| | |||||||||||||||||| ||||| |
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| T |
33010921 |
agctgaagttccaaaccagcaggagtacgaagcttaagatgaaagacatcca |
33010870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 32685388 - 32685464
Alignment:
| Q |
235 |
ttattatgtactgattcctatataactat---cgcaatgtgtcggtaatattatggttttgactcattctccagaat |
308 |
Q |
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||||| |||||| |||||||||||||||| || ||||||| |||||||| ||| ||||| |||||||||||||| |
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| T |
32685388 |
ttattctgtactaattcctatataactattatcgtgatgtgtctgtaatattctggctttgaatcattctccagaat |
32685464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 28734759 - 28734811
Alignment:
| Q |
22 |
ctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
74 |
Q |
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|||||||||||||||||| | ||| ||||||||| ||||||| | |||||||| |
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| T |
28734759 |
ctgaagttccaaaccagcagaagattgaagcttatgatgaaaaacatccaaaa |
28734811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 1403 - 1336
Alignment:
| Q |
111 |
taaaattaggcagttgtgt--agagtaagaaaggaaaactgaactatgttttgttttatccttaagtt |
176 |
Q |
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||||||||||||||||||| ||||||||||| ||| |||| |||||| ||||||||||| ||||| |
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| T |
1403 |
taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt |
1336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 2214 - 2281
Alignment:
| Q |
111 |
taaaattaggcagttgtg--tagagtaagaaaggaaaactgaactatgttttgttttatccttaagtt |
176 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||| |
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| T |
2214 |
taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt |
2281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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