View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7541_low_1 (Length: 500)
Name: NF7541_low_1
Description: NF7541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7541_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 24104776 - 24105256
Alignment:
| Q |
1 |
ctgttaagagaatcaatgtgtcttctgttaatatggttataagaaatggtggaaaattgcatgcttgggttgattatgattcgaattcgaggcgtttgga |
100 |
Q |
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| T |
24104776 |
ctgttaagagaatcaatgtgtcttctgttaatatggttataagaaatggtggaaagttgcatggttggattgattatgattcgaattcgaggcgtttgga |
24104875 |
T |
|
| Q |
101 |
agttaggttgagccgatatggtcattcaaagccggttaatccgttgttatggcaatcggttgatttgtcgtataattggacaactgaggagatttttgca |
200 |
Q |
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| T |
24104876 |
agttaggttgagccgatatggtcactcaaagccggttaatccgttgttatggcaatcggttgatttgtcgtataattggacaactgaggagatttttgca |
24104975 |
T |
|
| Q |
201 |
ggatttagttcaatgaaagggaaaacttctcaagcatgttttctctattcatggagctttgatgtaaggcattttcgacattggatgcattctgagccga |
300 |
Q |
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| T |
24104976 |
ggatttagttcaatgaaagggaaaacttctcaagcatgttttctctattcatggagctttgatgtaaggcattttcgacattggatgcattctgagccga |
24105075 |
T |
|
| Q |
301 |
tggatacaaaagcttattatgctaagaacacatatagtccaccggcagacaaaccgaggagtgattgtgttttaagaattcttgctgcaatgatatttgg |
400 |
Q |
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| T |
24105076 |
tggatacaaaagcttattatgctaagaacacatacagtccaccggcagacaaaccgaggagtgattgtgttttaagaattcttgctgcaatgatatttgg |
24105175 |
T |
|
| Q |
401 |
ttctggatgtggagcattggcggcgttcaccgtgctttatttgtggacgatgtttggtaatagacgtcctgtggtgcctga |
481 |
Q |
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| T |
24105176 |
ttctggatgtggagcattggcggcgttcaccgtgctttatttgtggacgatgtttggtaatagacgtcctgtggtgcctga |
24105256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 3028494 - 3028413
Alignment:
| Q |
367 |
gtgttttaagaattcttgctgcaatgatatttggttctggatgtggagcattggcggcgttcaccgtgctttatttgtggac |
448 |
Q |
| |
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||||||||||| ||||||||||||||||||||| | |||| |||||||||||| | || || | ||||||||||||||||| |
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| T |
3028494 |
gtgttttaagagttcttgctgcaatgatatttgatactggttgtggagcattgacagcatttattgtgctttatttgtggac |
3028413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 5919037 - 5919142
Alignment:
| Q |
362 |
tgattgtgttttaagaattcttgctgcaatgatatttggttctggatgtggagcattggcggcgttcaccgtgctttatttgtggacgatgtttggtaat |
461 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||| |||||||||||| | || ||||| ||||||||||||||||| || ||||| ||| |
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| T |
5919037 |
tgattgtgttttaagagttcttgctgcaatgatatttggcactggttgtggagcattgacagcattcactgtgctttatttgtggacaatctttggcaat |
5919136 |
T |
|
| Q |
462 |
agacgt |
467 |
Q |
| |
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| |||| |
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| T |
5919137 |
aaacgt |
5919142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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