View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7541_low_3 (Length: 291)
Name: NF7541_low_3
Description: NF7541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7541_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 5469172 - 5468913
Alignment:
| Q |
18 |
caaaggatccccacaaagccctaggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtag |
117 |
Q |
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| T |
5469172 |
caaaggatccccacaaagcccttggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtag |
5469073 |
T |
|
| Q |
118 |
gacaagttcaaataactcaaggatgtcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctcttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469072 |
gacaagttcaaataactcaaggatgtcatggaagccatgctcgcagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctcttt |
5468973 |
T |
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| Q |
218 |
gtgatccaatgttgttgggtatatttccagtgagctgattccaagacaaattcagagcac |
277 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5468972 |
gtgatccaatgttgttgggtatatttccagtaagctgattccaagacaaattcagagcac |
5468913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 59 - 277
Target Start/End: Complemental strand, 5478768 - 5478550
Alignment:
| Q |
59 |
gctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgct |
158 |
Q |
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| T |
5478768 |
gctcattgaaggtgccaaactgattagccatcggaatttgttctgaaagattgttgtatgacaaattcaaatgactcaagaatgtcattgaagccatgct |
5478669 |
T |
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| Q |
159 |
cgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatttccagtgagctgattc |
258 |
Q |
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| T |
5478668 |
tggagggactggacctgaaagattattatgtgaaaggtcaagattttctaaatctattagtgatccaatgttattgggtatattcccagtaagctgattc |
5478569 |
T |
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| Q |
259 |
caagacaaattcagagcac |
277 |
Q |
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| T |
5478568 |
caggacaaattcagagcac |
5478550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 5486932 - 5486673
Alignment:
| Q |
18 |
caaaggatccccacaaagccctaggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtag |
117 |
Q |
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|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
5486932 |
caaaggatggccacaaagtcctgcattgcctacatatgatagctcattgaaggtgccaaattgattagccactggaatttgtccagaaaggttgttgtat |
5486833 |
T |
|
| Q |
118 |
gacaagttcaaataactcaaggatgtcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctcttt |
217 |
Q |
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|| ||||||||| ||||| |||| |||||||||||||| | |||||||| ||| |||| || ||| ||||||||||||||| ||||||||| | || |
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| T |
5486832 |
gataagttcaaaaggctcaaaaatgtaatggaagccatgcttggagggattgaacctgaaatatggttgtgtgaaaggtcaagactttctaaatttgtta |
5486733 |
T |
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| Q |
218 |
gtgatccaatgttgttgggtatatttccagtgagctgattccaagacaaattcagagcac |
277 |
Q |
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||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||| |
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| T |
5486732 |
atgatccaatgttgttgggtatgttcccagttagctgattccaagacaaattcagggcac |
5486673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 67 - 275
Target Start/End: Complemental strand, 5491883 - 5491675
Alignment:
| Q |
67 |
aaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgctcgtaggga |
166 |
Q |
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||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||| | | ||||| |
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| T |
5491883 |
aaggttccaaactgattagctaacggaattcttccagagagattgttgtatgacaagttcaaacgactcagaaatgtcatggaagccatgtttggaggga |
5491784 |
T |
|
| Q |
167 |
ttggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatttccagtgagctgattccaagacaa |
266 |
Q |
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||||||| |||||||||||||||||||| ||||||| |||||||||| || |||||||||| ||| |||||||||| ||||| ||||||||||| ||||| |
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| T |
5491783 |
ttggacctgaaagattgttatgtgaaagatcaagatattctaaatctgttagtgatccaatcttgctgggtatattcccagtaagctgattccaggacaa |
5491684 |
T |
|
| Q |
267 |
attcagagc |
275 |
Q |
| |
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||| ||||| |
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| T |
5491683 |
atttagagc |
5491675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 5502749 - 5502487
Alignment:
| Q |
18 |
caaaggatccccacaaagccctaggttgcctacata---tgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttg |
114 |
Q |
| |
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|||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| ||||||||||||| | ||||||||||| | ||||||||| |
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| T |
5502749 |
caaaggatgtccacaaagccccgggttgccttcataaattgatggctcattgaaggtggcaaactgattagccatcggaatttgtcccaaaaggttgttg |
5502650 |
T |
|
| Q |
115 |
taggacaagttcaaataactcaaggatgtcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctc |
214 |
Q |
| |
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|| ||||||||||||| ||| | | |||||||||| |||||||| ||| || ||||| ||||| ||| ||||||||||||||| ||||||||| | |
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| T |
5502649 |
tatgacaagttcaaatgacttaggaatgtcatggaggccatgctttgaggaatgggacctataagatggttgtgtgaaaggtcaagactttctaaatttg |
5502550 |
T |
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| Q |
215 |
tttgtgatccaatgttgttgggtatatttccagtgagctgattccaagacaaattcagagcac |
277 |
Q |
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|| | ||||||||||||| |||| | ||||| || |||||||| ||||||||||| |||| |
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| T |
5502549 |
ttaataatccaatgttgtttggtaattccccagttaggtgattccaggacaaattcagggcac |
5502487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 277
Target Start/End: Complemental strand, 5497655 - 5497446
Alignment:
| Q |
68 |
aggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgctcgtagggat |
167 |
Q |
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||||| ||||||||||||| |||||| ||| || || |||||||| ||||||||||||| ||| | | |||||||||||||||| | | |||||| |
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| T |
5497655 |
aggtggcaaactgattagccagcggaattcttccggaaagattgttgtatgacaagttcaaatgacttaggaatgtcatggaagccatagttggagggat |
5497556 |
T |
|
| Q |
168 |
tggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatttccagtgagctgattccaagacaaa |
267 |
Q |
| |
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||||| ||||| ||||||||||||| |||||| |||||||||||| || || ||||||||| | |||||||| ||||| ||||||||||| |||| | |
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| T |
5497555 |
aggacccgaaaggttgttatgtgaaaagtcaaggttttctaaatcttttagtaatccaatgtcactaggtatattcccagttagctgattccatgacaga |
5497456 |
T |
|
| Q |
268 |
ttcagagcac |
277 |
Q |
| |
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|||||||||| |
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| T |
5497455 |
ttcagagcac |
5497446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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