View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7542_high_3 (Length: 457)
Name: NF7542_high_3
Description: NF7542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7542_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 28441044 - 28441400
Alignment:
| Q |
18 |
ataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatgnnnnnnnnnnnnnnnnnnnnnncatgataaacaagaactac |
117 |
Q |
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| T |
28441044 |
ataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatgaaaaaaaaatcaaaatcaaaa-catgataaacaagaactac |
28441142 |
T |
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| Q |
118 |
tgaactatattacacaagtgaaagagaaagaacaagacataattatagtaccgttgttgatgttgttattttcagtatcccatgatgagaaacaagcgaa |
217 |
Q |
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| T |
28441143 |
tgaactatattacacaagtgaaaga------acaagacataattatagtaccgttgttgatgttgttattttcagtatcccatgatgagaaacaagcgaa |
28441236 |
T |
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| Q |
218 |
aagtgagaatttcatagcttaagnnnnnnnn--gaataaaagattaatttggttggttaaggaatttgggtgtataatatatatgaagagaatgagagaa |
315 |
Q |
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| T |
28441237 |
aagtgagaatttcatagcttaagaaaaaaaaaagaataaaagattaatttggttggttaaggaatttgggtgtataatat--atgaagagaatgagagaa |
28441334 |
T |
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| Q |
316 |
aaaggacatgtttgaaggaacagataaagaagaaaacacggtctaaaggcttgtgtgtactaaatt |
381 |
Q |
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| T |
28441335 |
aaaggacatgtttgaaggaacagataaagaagaaaacacggtctaaaggcttgtgtgtactaaatt |
28441400 |
T |
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