View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7542_low_1 (Length: 536)
Name: NF7542_low_1
Description: NF7542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7542_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 38056686 - 38056425
Alignment:
| Q |
16 |
atacagaaggagattcaatttcaattagttttggtatttattacactagttacttcttaattcccatataataatctattcatttccatgttgtcacagt |
115 |
Q |
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| T |
38056686 |
atacagaaggagattcaatttcaattagttttggtatttattacactagttacttcttaattcccatataataatctattcatttccatgttgtcacagt |
38056587 |
T |
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| Q |
116 |
tggttgcccttttatttagtttaatttttctttaaatgttttgtattgaaagatttggagaggaagatcgaaaccagaagaaaagcatttcttgaagctg |
215 |
Q |
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| T |
38056586 |
tggttgcccttttatttaatttaatttttctttaaatgttttgtattgaaagatttggagaggaagattgaaaccagaagaaaagcatttcttgaagctg |
38056487 |
T |
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| Q |
216 |
cccccatcatgagaaaaagtttctcaggtatatgacnnnnnnnatgcaatgtgtttatataa |
277 |
Q |
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| T |
38056486 |
cccccatcatgagaaaaagtttctcaggtatatgactttttttatgcaatgtgtttatataa |
38056425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 367 - 523
Target Start/End: Complemental strand, 38056343 - 38056185
Alignment:
| Q |
367 |
gcatatttagtcaaaaacaatgttagcatatctgannnnnnnctttaaatgttaatattatgatattagcatatccgattttgcgccttttgtcaaacaa |
466 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056343 |
gcatatttagtcaaaaacaatgttagcatatctgatttttttctttaaatgttaatattatgatattagcatatccgattttgcgccttttgtcaaacaa |
38056244 |
T |
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| Q |
467 |
gac--aaaatttctcatgtaatcctgtattattttggtagcttacctaacaacagtgat |
523 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056243 |
gacgaaaattttctcatgtaatcctgtattattttggtagcttacctaacaacagtgat |
38056185 |
T |
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