View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7542_low_4 (Length: 480)
Name: NF7542_low_4
Description: NF7542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7542_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 82 - 301
Target Start/End: Complemental strand, 41342404 - 41342185
Alignment:
| Q |
82 |
tctcattatataactttttggtttaggtaaaagattttgtgaagttaaataatttatattatgctgggagtcatggtatggacataatggcaccatcagg |
181 |
Q |
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| T |
41342404 |
tctcattatataactttttggtttaggtaaaagattttgtgaagttaaataatttatattatgctgggagtcatggtatggacataatggcaccatcagg |
41342305 |
T |
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| Q |
182 |
accaattagatcttctgacggcaaccaccaatgctacaacaacactcttgacacaaatgtgagtaattccatttgtgccaatatactttaaccattttta |
281 |
Q |
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| T |
41342304 |
accaattagatcttctgacggcaaccaccaatgctacaacaacactcttgacacaaatgtgagtaattccatttgtgccaatatactttaaccattttta |
41342205 |
T |
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| Q |
282 |
attagagcatttgattctta |
301 |
Q |
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| T |
41342204 |
attagagcatttgattctta |
41342185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 41342187 - 41342084
Alignment:
| Q |
358 |
ttataaaataaagcatttgatatttgatgttaattttcagggcaatgaagttccatttcaacctgccaagaagtttttacctgcaattcaagaggtcagc |
457 |
Q |
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| T |
41342187 |
ttataaaataaagcatttgatatt-gatgttaattttcagggcaatgaagttccatttcaacctgccaagaagtttttacctgcaattcaagaggtcagc |
41342089 |
T |
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| Q |
458 |
aagtt |
462 |
Q |
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||||| |
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| T |
41342088 |
aagtt |
41342084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 41342481 - 41342449
Alignment:
| Q |
13 |
gagagaaggtgagttataaagcttacttaattt |
45 |
Q |
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| T |
41342481 |
gagagaaggtgagttataaagcttacttaattt |
41342449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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