View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7544_high_1 (Length: 241)
Name: NF7544_high_1
Description: NF7544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7544_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46011009 - 46011228
Alignment:
| Q |
1 |
tcttatcaaattctgtttctgataatcccatttccattaaaagggcaacaacaattgaagaatattggctcgctgccactgatagttatgtagctactca |
100 |
Q |
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| T |
46011009 |
tcttatcgaattctgtttatgataatcccatttccattaaaagggcaacaacaattgaagaatattggctcgctgccactgatagttatgtagctactca |
46011108 |
T |
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| Q |
101 |
cacttttcacatcgcttccaaacaacttcatcatttgttaacaacatccacatcaaccaatatcaatatcaatatcaataccaagacaaagtattttgaa |
200 |
Q |
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| T |
46011109 |
cacttttcacatcacttccaaacaacttcatcatttgttaacaacatccacatcaac------caatatcaatatcaataccaagacaaagtattttgaa |
46011202 |
T |
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| Q |
201 |
attatttcagctatgatttggaaatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
46011203 |
attatttcagctatgatttggaaatg |
46011228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 13115893 - 13116096
Alignment:
| Q |
8 |
aaattctgtttctgataatcccatttccattaaaagggcaacaacaattgaagaatattggctcgctgccactgatagttatgtagctactcacactttt |
107 |
Q |
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| T |
13115893 |
aaattctgtttctgacaatcccatttccatcaaaagggcaacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacactttt |
13115992 |
T |
|
| Q |
108 |
cacatcgcttccaaacaacttcatcatttgttaacaacatccacatcaaccaatatcaatatcaatatcaataccaagacaaagtattttgaaattattt |
207 |
Q |
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| T |
13115993 |
cacatcacttccaaccaacttcaccatttggtaacaccatccacaacatctaa---------------caatatcaaaacaaaatattttgaaattattt |
13116077 |
T |
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| Q |
208 |
cagctatgatttggaaatg |
226 |
Q |
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| T |
13116078 |
cagctatgatttggaaatg |
13116096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 15924222 - 15924272
Alignment:
| Q |
176 |
caataccaagacaaagtattttgaaattatttcagctatgatttggaaatg |
226 |
Q |
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||||||| | || ||||||||||||||||||||||||| ||| |||||||| |
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| T |
15924222 |
caataccgatactaagtattttgaaattatttcagctacgatatggaaatg |
15924272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 10419992 - 10420029
Alignment:
| Q |
188 |
aaagtattttgaaattatttcagctatgatttggaaat |
225 |
Q |
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| T |
10419992 |
aaagtattttgaaattatttcagcgatgatatggaaat |
10420029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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