View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7544_low_2 (Length: 236)
Name: NF7544_low_2
Description: NF7544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7544_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 6517053 - 6516836
Alignment:
| Q |
2 |
atatgagacaaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgtt |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6517053 |
atatgagataaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgtt |
6516954 |
T |
|
| Q |
102 |
gatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattgagtggttttgttggctatcgaagcaggaacgagtcgcgccaaacc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6516953 |
gatactcaggatcaatgtagcaaaatgttccagctgcgcctgtcatgcgatattgagtggttttgttggctattgaagcaggaacgagtcgcgccaaacc |
6516854 |
T |
|
| Q |
202 |
aacatcactgatcttgct |
219 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6516853 |
aacatcactgatcttgct |
6516836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 42674191 - 42673985
Alignment:
| Q |
13 |
acccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcagga |
112 |
Q |
| |
|
||||||||||| |||| |||| || |||||||| | || | ||| |||||| |||| |||||||| || ||||||| ||| |||||||||||||| ||| |
|
|
| T |
42674191 |
acccattggagtctttccagtaatgatttgtagaagcataacacctaatgaatatatgtctgattttacgcccaatagtcctgtttgttgatactccgga |
42674092 |
T |
|
| Q |
113 |
tcaatgtagcaaaatgttccagctgcacctgtcatgcgatattgagtggttttgttggctatcgaagcaggaacgagtcgcgccaaaccaacatcactga |
212 |
Q |
| |
|
||||| || |||||||||| |||||| |||| || |||||| || |||||||| ||| |||| ||||| || | |||||||||||||| |||| |
|
|
| T |
42674091 |
tcaatataaaaaaatgttccggctgcatttgtcttgtgatattcggtagttttgttttctacagaaggtggaacaagccttgccaaaccaacatcgctga |
42673992 |
T |
|
| Q |
213 |
tcttgct |
219 |
Q |
| |
|
||||||| |
|
|
| T |
42673991 |
tcttgct |
42673985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 50439260 - 50439406
Alignment:
| Q |
10 |
caaacccattggaggctttgcagtgataatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactca |
109 |
Q |
| |
|
|||||||||||| | ||||| || | |||||| || ||||| || |||| |||| ||| ||||||||||||||| || | ||| ||||| ||||||||| |
|
|
| T |
50439260 |
caaacccattggtgattttgctgtcaaaatttgaaggaaaatgattccaagtgaatatacatctgatttcacacctaacattcctgtttgctgatactca |
50439359 |
T |
|
| Q |
110 |
ggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
156 |
Q |
| |
|
||||| || || || |||||||| |||| | |||||||||||||| |
|
|
| T |
50439360 |
ggatctatataacagaatgttcctgctgttgccgtcatgcgatattg |
50439406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 48235715 - 48235755
Alignment:
| Q |
95 |
gtttgttgatactcaggatcaatgtagcaaaatgttccagc |
135 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
48235715 |
gtttgttgatactcgggatcaatataacaaaatgttccagc |
48235755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 3686780 - 3686724
Alignment:
| Q |
100 |
ttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
156 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||||||| | |||||| ||||||| |
|
|
| T |
3686780 |
ttgatactctggatcaatgtaacataatgttccagctgcttcagtcatgtgatattg |
3686724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University